Skip to content
@stephenslab

Stephens lab

Research in statistical and computational methods for genetics at the University of Chicago.

Pinned Loading

  1. susieR susieR Public

    R package for "sum of single effects" regression.

    R 171 42

  2. mashr mashr Public

    An R package for multivariate adaptive shrinkage.

    R 88 19

  3. flashr flashr Public

    R package for Empirical Bayes Factor Analysis.

    R 49 11

  4. fastTopics fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 74 7

  5. ebnm ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 12 9

  6. dsc dsc Public

    Repo for Dynamic Statistical Comparisons project

    HTML 11 12

Repositories

Showing 10 of 101 repositories
  • fastTopics-experiments Public

    Numerical experiments on fitting non-negative matrix factorizations and topic models.

    stephenslab/fastTopics-experiments’s past year of commit activity
    R 1 MIT 1 0 0 Updated Jul 14, 2024
  • fsusieR Public

    Draft package for "Sum of Single Functions" method.

    stephenslab/fsusieR’s past year of commit activity
    R 2 1 4 0 Updated Jul 11, 2024
  • fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    stephenslab/fastTopics’s past year of commit activity
    R 74 7 11 1 Updated Jul 9, 2024
  • smashr Public

    An R package for smoothing & signal denoising using adaptive shrinkage.

    stephenslab/smashr’s past year of commit activity
    R 4 GPL-3.0 5 2 0 Updated Jul 8, 2024
  • rss Public

    Regression with Summary Statistics.

    stephenslab/rss’s past year of commit activity
    MATLAB 49 MIT 11 0 1 Updated Jul 3, 2024
  • fastglmpca Public

    Fast algorithms for GLM-PCA.

    stephenslab/fastglmpca’s past year of commit activity
    HTML 6 GPL-2.0 0 1 0 Updated Jun 26, 2024
  • ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    stephenslab/ebnm’s past year of commit activity
    R 12 9 9 0 Updated Jun 17, 2024
  • mr.mash.alpha Public

    R package implementing methods for multivariate multiple regression with adaptive shrinkage priors.

    stephenslab/mr.mash.alpha’s past year of commit activity
    R 4 2 0 0 Updated Jun 3, 2024
  • udr Public

    R package implementing empirical Bayes methods for multivariate normal means.

    stephenslab/udr’s past year of commit activity
    R 7 1 9 0 Updated May 28, 2024
  • gbcd-workflow Public

    GBCD analyses of scRNA-seq data from malignant cells.

    stephenslab/gbcd-workflow’s past year of commit activity
    HTML 2 MIT 1 2 1 Updated May 26, 2024

Top languages

Loading…

Most used topics

Loading…