ci: Use --no-build-isolation to instal cgat #45
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Source : https://github.com/marketplace/actions/sphinx-docs-to-github-pages | |
| name: Sphinx docs to gh-pages | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| # Uncomment if only tagged releases are to have documentation built | |
| # tags: | |
| # - v* | |
| workflow_dispatch: # Uncomment line if you also want to trigger action manually | |
| jobs: | |
| sphinx_docs_to_gh-pages: | |
| runs-on: ubuntu-latest | |
| name: Sphinx docs to gh-pages | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Installing the Documentation requirements | |
| run: | | |
| # Install build dependencies for now (see | |
| # https://github.com/cgat-developers/cgat-apps/issues/134#issuecomment-2503431974) | |
| pip install numpy | |
| pip install Cython | |
| pip install pysam | |
| pip install wheel | |
| pip install --no-build-isolation git:+https://github.com/cgat-developers/[email protected] | |
| pip3 install --no-build-isolation .[docs] | |
| - name: Running Sphinx to gh-pages Action | |
| # Uncomment if only tagged releases are to have documentation built | |
| # if: startsWith(github.ref, 'refs/tags') | |
| uses: ns-rse/action-sphinx-docs-to-gh-pages@main | |
| with: | |
| # When testing set this branch to your branch, when working switch to main. It WILL fail if not | |
| # defined as it defaults to 'main'. | |
| branch: main | |
| dir_docs: docs | |
| sphinx-apidoc-exclude: "../*setup* ../*tests* ../*.ipynb ../demo.py ../make_baseline.py ../jupyter_notebook_config.py ../demo_ftrs.py" | |
| sphinx-apidoc-opts: "--separate -o . ../" | |
| sphinx-opts: "" | |
| multiversion: true | |
| multiversionopts: "source build" | |
| - name: Setup tmate session | |
| if: ${{ failure() }} | |
| uses: mxschmitt/action-tmate@v3 | |
| timeout-minutes: 15 |