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feature: extract transcripts #97

Merged
merged 1 commit into from
Nov 29, 2024
Merged

feature: extract transcripts #97

merged 1 commit into from
Nov 29, 2024

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ns-rse
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@ns-rse ns-rse commented Nov 29, 2024

Closes #86

Adds isoslam.extract_transcripts() which pulls out transcripts from a .bed file.

Questions/things to check

Further down the line once I understand I hope to clarify

  • Does this need to be a dictionary?
  • If so would there be any benefit to making it a nested dictionary with names for chromosome, start, end, transcript_id and bedstrand?

Closes #86

Adds `isoslam.extract_transcripts()` which pulls out transcripts from a `.bed` file.

- Replaced `.strip("_introns")` due to [B005
strip-with-multiple-characters](https://docs.astral.sh/ruff/rules/strip-with-multi-characters/)

Questions/things to check

Further down the line once I understand I hope to clarify

- Does this need to be a dictionary?
- If so would there be any benefit to making it a nested dictionary with names for `chromosome`, `start`, `end`,
- `transcript_id` and `bedstrand`?
@ns-rse ns-rse merged commit e2f51dc into main Nov 29, 2024
1 of 14 checks passed
@ns-rse ns-rse deleted the ns-rse/86-bed-dictionary branch November 29, 2024 15:18
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Build dictionary from bed file
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