Move GI to GitHub actions (#138)

* Move CI to GitHub Actions

* Get tests running

* Add change log.

.github/workflows/ci.yml

@@ -0,0 +1,41 @@
+name: CI
+
+on:
+  push:
+  pull_request:
+  workflow_dispatch:
+
+
+jobs:
+  core:
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      submodules: false
+      coverage: codecov
+      envs: |
+        - linux: py39
+
+  test:
+    needs: [core]
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+    with:
+      submodules: false
+      coverage: codecov
+      envs: |
+        - windows: py39
+        - macos: py39
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+  docs:
+      needs: [test]
+      uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@main
+      with:
+        default_python: '3.9'
+        submodules: false
+        pytest: false
+        libraries: |
+          apt:
+            - graphviz
+        envs: |
+          - linux: build_docs

changelog/138.trivial.rst

@@ -0,0 +1 @@
+Move CI to GitHub actions.

pyproject.toml

@@ -39,7 +39,7 @@ build-backend = 'setuptools.build_meta'
     package = "sunkit_spex"
     filename = "CHANGELOG.rst"
     directory = "changelog/"
-    issue_format = "`#{issue} <https://github.com/sunpy/sunxspex/pull/{issue}>`__"
+    issue_format = "`#{issue} <https://github.com/sunpy/sunkit-spex/pull/{issue}>`__"
     title_format = "{version} ({project_date})"
 
     [[tool.towncrier.type]]

setup.cfg

@@ -62,6 +62,22 @@ remote_data_strict = False
 # Pin junit behaviour; we might want to update this to xunit2 at some point
 junit_family=xunit1
 filterwarnings =
+    error
+    # https://github.com/pytest-dev/pytest-cov/issues/557
+    # It was fixed and released but it does not seem to be fixed
+    ignore:The --rsyncdir command line argument and rsyncdirs config variable are deprecated.:DeprecationWarning
+    # Raised by sunpy.coordinates.transformations and will be removed in sunpy 6.1
+    ignore:.*module is deprecated, as it was designed for internal use
+    # https://github.com/pandas-dev/pandas/issues/54466
+    # Should stop when pandas 3.0.0 is released
+    ignore:(?s).*Pyarrow will become a required dependency of pandas:DeprecationWarning
+    # TODO review and fix just getting test running
+    ignore:numpy.ndarray size changed.*:RuntimeWarning
+    ignore:Some input energy values outside valid range.*:UserWarning
+    ignore:invalid value encountered in.*:RuntimeWarning
+    ignore:divide by zero encountered in.*:RuntimeWarning
+    ignore:The truth value of an empty array is ambiguous..*:DeprecationWarning
+    ignore:LinAlgError when calculating the hessian. Errors may not be calculated.:UserWarning
 
 [pycodestyle]
 max_line_length = 100

sunkit_spex/sunxspex_fitting/fitter.py

@@ -650,7 +650,7 @@ def complicated_model(T1, EM1, C, something_complicated, energies=None):
         self.rParams["Status"], self.rParams["Value"], self.rParams["Bounds"], self.rParams["Error"] = list(_rps.param_status), list(_rps.param_value), list(_rps.param_bounds), list(_rps.param_error)
 
     def add_photon_model(self, function, overwrite=False):
-        """ Add user photon model to fitting namespace.
+        r"""Add user photon model to fitting namespace.
 
         Takes a user defined function intended to be used as a model or model component when
         giving a
@@ -3277,7 +3277,7 @@ def _plot_1spec(self,
         res.axhline(0, linestyle=':', color='k')
         res.set_ylim(self.res_ylim)
         # res.set_ylabel('(y$_{Data}$ - y$_{Model}$)/$\sigma_{Error}$')
-        res.set_ylabel('($D - M$)/$\sigma$')
+        res.set_ylabel(r'($D - M$)/$\sigma$')
         res.set_xlim(self.plot_xlims)
         res.set_xlabel("Energy [keV]")
 
@@ -3458,7 +3458,7 @@ def _plot_from_dict(self, subplot_axes_grid):
             res.axhline(0, linestyle=':', color='k')
             res.set_ylim(self.res_ylim)
             # res.set_ylabel('(y$_{Data}$ - y$_{Model}$)/$\sigma_{Error}$')
-            res.set_ylabel('($D - M$)/$\sigma$')
+            res.set_ylabel(r'($D - M$)/$\sigma$')
             res.set_xlim(self.plot_xlims)
             res.set_xlabel("Energy [keV]")