Working Dockerfile

Dockerfile

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+#   Licensed to the Apache Software Foundation (ASF) under one or more
+#   contributor license agreements.  See the NOTICE file distributed with
+#   this work for additional information regarding copyright ownership.
+#   The ASF licenses this file to You under the Apache License, Version 2.0
+#   (the "License"); you may not use this file except in compliance with
+#   the License.  You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+
+
+FROM openjdk:11-jre-slim-buster
+#MAINTAINER Stian Soiland-Reyes <[email protected]>
+
+ENV LANG C.UTF-8
+RUN set -eux; \
+    apt-get update; \
+    apt-get install -y --no-install-recommends \
+       bash curl ca-certificates findutils coreutils gettext pwgen procps tini \
+    ; \
+    rm -rf /var/lib/apt/lists/*
+
+ARG FUSEKI_JAR=jena-fuseki-geosparql-4.5.0-SNAPSHOT.jar
+COPY dggs-jar/current/${FUSEKI_JAR} .
+ADD output/dataset_dggs_level_7.ttl .
+
+# Update below according to https://jena.apache.org/download/
+# and checksum for apache-jena-fuseki-4.x.x.tar.gz.sha512
+#ENV FUSEKI_SHA512 c0b9ab61a57f2c0e027f9d1a07710a22e672eb87730a6460b0869f6a6997a2628703bd99b1590bccd38bdc2a0f78d7be17890b4b88f65ef5518c882c8736a6b3
+#ENV FUSEKI_VERSION 4.0.0
+# No need for https due to sha512 checksums below
+#ENV ASF_MIRROR http://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=
+#ENV ASF_ARCHIVE http://archive.apache.org/dist/
+
+#LABEL org.opencontainers.image.url https://github.com/stain/jena-docker/tree/master/jena-fuseki
+#LABEL org.opencontainers.image.source https://github.com/stain/jena-docker/
+#LABEL org.opencontainers.image.documentation https://jena.apache.org/documentation/fuseki2/
+#LABEL org.opencontainers.image.title "Apache Jena Fuseki"
+#LABEL org.opencontainers.image.description "Fuseki is a SPARQL 1.1 server with a web interface, backed by the Apache Jena TDB RDF triple store."
+#LABEL org.opencontainers.image.version ${FUSEKI_VERSION}
+#LABEL org.opencontainers.image.licenses "(Apache-2.0 AND (GPL-2.0 WITH Classpath-exception-2.0) AND GPL-3.0)"
+#LABEL org.opencontainers.image.authors "Apache Jena Fuseki by https://jena.apache.org/; this image by https://orcid.org/0000-0001-9842-9718"
+
+# Config and data
+ENV FUSEKI_BASE /fuseki
+
+# Installation folder
+ENV FUSEKI_HOME /jena-fuseki
+
+WORKDIR /tmp
+# published sha512 checksum
+#RUN echo "$FUSEKI_SHA512  fuseki.tar.gz" > fuseki.tar.gz.sha512
+# Download/check/unpack/move in one go (to reduce image size)
+#RUN     (curl --location --silent --show-error --fail --retry-connrefused --retry 3 --output fuseki.tar.gz ${ASF_MIRROR}jena/binaries/apache-jena-fuseki-$FUSEKI_VERSION.tar.gz || \
+#         curl --fail --silent --show-error --retry-connrefused --retry 3 --output fuseki.tar.gz $ASF_ARCHIVE/jena/binaries/apache-jena-fuseki-$FUSEKI_VERSION.tar.gz) && \
+#        sha512sum -c fuseki.tar.gz.sha512 && \
+#        tar zxf fuseki.tar.gz && \
+#        mv apache-jena-fuseki* $FUSEKI_HOME && \
+#        rm fuseki.tar.gz* && \
+#        cd $FUSEKI_HOME && rm -rf fuseki.war && chmod 755 fuseki-server
+
+# Test the install by testing it's ping resource. 20s sleep because Docker Hub.
+#RUN  $FUSEKI_HOME/fuseki-server & \
+#     sleep 20 && \
+#     curl -sS --fail 'http://localhost:3030/$/ping'
+
+# No need to kill Fuseki as our shell will exit after curl
+
+# As "localhost" is often inaccessible within Docker container,
+# we'll enable basic-auth with a random admin password
+# (which we'll generate on start-up)
+COPY shiro.ini $FUSEKI_HOME/shiro.ini
+COPY docker-entrypoint.sh /
+RUN chmod 755 /docker-entrypoint.sh
+
+
+#COPY load.sh $FUSEKI_HOME/
+#COPY tdbloader $FUSEKI_HOME/
+#COPY tdbloader2 $FUSEKI_HOME/
+#RUN chmod 755 $FUSEKI_HOME/load.sh $FUSEKI_HOME/tdbloader $FUSEKI_HOME/tdbloader2
+#VOLUME /staging
+
+# Where we start our server from
+WORKDIR $FUSEKI_HOME
+
+# Make sure we start with empty /fuseki
+RUN rm -rf $FUSEKI_BASE
+#VOLUME $FUSEKI_BASE
+
+#EXPOSE 3030
+RUN mkdir /fuseki
+ENTRYPOINT ["/usr/bin/tini", "--", "/docker-entrypoint.sh"]
+#CMD ["/jena-fuseki/fuseki-server"]
+CMD ["sh", "-c", "java -jar /jena-fuseki-geosparql-4.5.0-SNAPSHOT.jar -rf /dataset_dggs_level_7.ttl -l false"]

Dockerfile.old

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+## Licensed to the Apache Software Foundation (ASF) under one or more
+## contributor license agreements.  See the NOTICE file distributed with
+## this work for additional information regarding copyright ownership.
+## The ASF licenses this file to You under the Apache License, Version 2.0
+## (the "License"); you may not use this file except in compliance with
+## the License.  You may obtain a copy of the License at
+##
+##     http://www.apache.org/licenses/LICENSE-2.0
+##
+## Unless required by applicable law or agreed to in writing, software
+## distributed under the License is distributed on an "AS IS" BASIS,
+## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+## See the License for the specific language governing permissions and
+## limitations under the License.
+
+## Apache Jena Fuseki server Dockerfile.
+
+## This Dockefile builds a reduced footprint container.
+
+ARG OPENJDK_VERSION=17
+ARG ALPINE_VERSION=3.15.0
+ARG JENA_VERSION=4.5.0
+
+# Internal, passed between stages.
+ARG FUSEKI_DIR=/fuseki
+ARG FUSEKI_JAR=jena-fuseki-geosparql-${JENA_VERSION}-SNAPSHOT.jar
+ARG JAVA_MINIMAL=/opt/java-minimal
+
+## ---- Stage: Download and build java.
+FROM openjdk:${OPENJDK_VERSION}-alpine AS base
+
+ARG JAVA_MINIMAL
+ARG JENA_VERSION
+ARG FUSEKI_DIR
+ARG FUSEKI_JAR
+#ARG REPO=https://repo1.maven.org/maven2
+#ARG JAR_URL=${REPO}/org/apache/jena/jena-fuseki-server/${JENA_VERSION}/${FUSEKI_JAR}
+#
+#RUN [ "${JENA_VERSION}" != "" ] || { echo -e '\n**** Set JENA_VERSION ****\n' ; exit 1 ; }
+#RUN echo && echo "==== Docker build for Apache Jena Fuseki ${JENA_VERSION} ====" && echo
+
+# Alpine: For objcopy used in jlink
+RUN apk add --no-cache curl binutils
+
+## -- Fuseki installed and runs in /fuseki.
+WORKDIR $FUSEKI_DIR
+
+## -- Download the jar file.
+#COPY download.sh .
+#RUN chmod a+x download.sh
+
+# Download, with check of the SHA1 checksum.
+#RUN #./download.sh --chksum sha1 "$JAR_URL"
+
+## -- Alternatives to download : copy already downloaded.
+COPY dggs-jar/current/${FUSEKI_JAR} .
+
+## Use Docker ADD - does not retry, does not check checksum, and may run every build.
+## ADD "$JAR_URL"
+
+## -- Make reduced Java JDK
+
+ARG JDEPS_EXTRA="jdk.crypto.cryptoki,jdk.crypto.ec"
+RUN \
+  JDEPS="$(jdeps --multi-release base --print-module-deps --ignore-missing-deps ${FUSEKI_JAR})"  && \
+  jlink \
+        --compress 2 --strip-debug --no-header-files --no-man-pages \
+        --output "${JAVA_MINIMAL}" \
+        --add-modules "${JDEPS},${JDEPS_EXTRA}"
+
+#ADD entrypoint.sh .
+#ADD log4j2.properties .
+ADD output/dataset_dggs_level_7.ttl .
+
+# Run as this user
+# -H : no home directorry
+# -D : no password
+
+RUN adduser -H -D fuseki fuseki
+
+## ---- Stage: Build runtime
+FROM alpine:${ALPINE_VERSION}
+
+## Import ARGs
+ARG JENA_VERSION
+ARG JAVA_MINIMAL
+ARG FUSEKI_DIR
+ARG FUSEKI_JAR
+
+COPY --from=base /opt/java-minimal /opt/java-minimal
+COPY --from=base /fuseki /fuseki
+COPY --from=base /etc/passwd /etc/passwd
+
+WORKDIR $FUSEKI_DIR
+
+ARG LOGS=${FUSEKI_DIR}/logs
+ARG DATA=${FUSEKI_DIR}/databases
+
+RUN \
+    mkdir -p $LOGS && \
+    mkdir -p $DATA && \
+    chown -R fuseki ${FUSEKI_DIR} #&& \
+#    chmod a+x entrypoint.sh
+
+## Default environment variables.
+ENV \
+    JAVA_HOME=${JAVA_MINIMAL}           \
+    JAVA_OPTIONS="-Xmx2048m -Xms2048m"  \
+    JENA_VERSION=${JENA_VERSION}        \
+    FUSEKI_JAR="${FUSEKI_JAR}"          \
+    FUSEKI_DIR="${FUSEKI_DIR}"
+
+USER fuseki
+
+#EXPOSE 3030
+
+ENTRYPOINT ["sh", "-c", "/opt/java-minimal/bin/java -jar /fuseki/jena-fuseki-geosparql-4.5.0-SNAPSHOT.jar -rf dataset_dggs_level_7.ttl"]
+#$JAVA_HOME/bin/java" $JAVA_OPTIONS -jar "${FUSEKI_DIR}/${FUSEKI_JAR}
+CMD []

docker-entrypoint.sh

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+#!/bin/bash
+#   Licensed to the Apache Software Foundation (ASF) under one or more
+#   contributor license agreements.  See the NOTICE file distributed with
+#   this work for additional information regarding copyright ownership.
+#   The ASF licenses this file to You under the Apache License, Version 2.0
+#   (the "License"); you may not use this file except in compliance with
+#   the License.  You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+
+set -e
+
+if [ ! -f "$FUSEKI_BASE/shiro.ini" ] ; then
+  # First time
+  echo "###################################"
+  echo "Initializing Apache Jena Fuseki"
+  echo ""
+  cp "$FUSEKI_HOME/shiro.ini" "$FUSEKI_BASE/shiro.ini"
+  if [ -z "$ADMIN_PASSWORD" ] ; then
+    ADMIN_PASSWORD=$(pwgen -s 15)
+    echo "Randomly generated admin password:"
+    echo ""
+    echo "admin=$ADMIN_PASSWORD"
+  fi
+  echo ""
+  echo "###################################"
+fi
+
+if [ -d "/fuseki-extra" ] && [ ! -d "$FUSEKI_BASE/extra" ] ; then
+  ln -s "/fuseki-extra" "$FUSEKI_BASE/extra"
+fi
+
+# $ADMIN_PASSWORD only modifies if ${ADMIN_PASSWORD}
+# is in shiro.ini
+if [ -n "$ADMIN_PASSWORD" ] ; then
+  export ADMIN_PASSWORD
+  envsubst '${ADMIN_PASSWORD}' < "$FUSEKI_BASE/shiro.ini" > "$FUSEKI_BASE/shiro.ini.$$" && \
+    mv "$FUSEKI_BASE/shiro.ini.$$" "$FUSEKI_BASE/shiro.ini"
+  unset ADMIN_PASSWORD # Don't keep it in memory
+  export ADMIN_PASSWORD
+fi
+
+# fork
+exec "$@" &
+
+TDB_VERSION=''
+if [ ! -z ${TDB+x} ] && [ "${TDB}" = "2" ] ; then
+  TDB_VERSION='tdb2'
+else
+  TDB_VERSION='tdb'
+fi
+
+# Wait until server is up
+while [[ $(curl -I http://localhost:3030 2>/dev/null | head -n 1 | cut -d$' ' -f2) != '200' ]]; do
+  sleep 1s
+done
+
+# Convert env to datasets
+printenv | egrep "^FUSEKI_DATASET_" | while read env_var
+do
+    dataset=$(echo $env_var | egrep -o "=.*$" | sed 's/^=//g')
+    curl -s 'http://localhost:3030/$/datasets'\
+         -H "Authorization: Basic $(echo -n admin:${ADMIN_PASSWORD} | base64)" \
+         -H 'Content-Type: application/x-www-form-urlencoded; charset=UTF-8'\
+         --data "dbName=${dataset}&dbType=${TDB_VERSION}"
+done
+
+# rejoin our exec
+wait

entrypoint.sh

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+#!/bin/sh
+## Licensed under the terms of http://www.apache.org/licenses/LICENSE-2.0
+
+## env | sort
+exec "$JAVA_HOME/bin/java" $JAVA_OPTIONS -jar "${FUSEKI_DIR}/${FUSEKI_JAR}" "$@"

jena-build-run-query-scripts/build_jena.sh

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+export PATH=/usr/local/apache-maven-3.8.4/bin:$PATH &&
+cd /mnt/sda2/Surround/jena-source/jena/jena-geosparql &&
+mvn clean install &&
+cd /mnt/sda2/Surround/jena-source/jena/jena-fuseki2/jena-fuseki-geosparql &&
+mvn clean install

jena-build-run-query-scripts/query_jena.sh

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+curl http://localhost:3030/ds -X POST --data 'query=PREFIX+geof%3A+%3Chttp%3A%2F%2Fwww.opengis.net%2Fdef%2Ffunction%2Fgeosparql%2F%3E%0APREFIX+geo%3A+%3Chttp%3A%2F%2Fwww.opengis.net%2Font%2Fgeosparql%23%3E%0APREFIX+testgeom%3A+%3Chttp%3A%2F%2Ftestgeom%23%3E%0A%0ASELECT+%3Fa+%3Fb+%3Fgeoma+%3Fgeomb+%7B%0A++%3Fa+geo%3AhasGeometry+%2F+geo%3AasDGGS+%3Fgeoma+.%0A++%7B+SELECT+%3Fb+%3Fgeomb+%7B%0A++%09%3Fb+geo%3AhasGeometry+%2F+geo%3AasDGGS+%3Fgeomb+.%0A%09%7D%0A++%7D+%0A++FILTER+(%3Fa+!%3D+%3Fb)%0A++FILTER(geof%3AsfEquals(%3Fgeoma%2C+%3Fgeomb))%0A%7D+LIMIT+10'

jena-build-run-query-scripts/run_jena.sh

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+java -jar /mnt/sda2/Surround/jena-source/jena/jena-fuseki2/jena-fuseki-geosparql/target/jena-fuseki-geosparql-4.5.0-SNAPSHOT.jar -rf "/mnt/sda2/Surround/geosparql-benchmark-dggs/output/dataset_dggs_level_7.ttl"

log4j2.properties

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+## Licensed under the terms of http://www.apache.org/licenses/LICENSE-2.0
+status = error
+name = PropertiesConfig
+
+## filters = threshold
+## filter.threshold.type = ThresholdFilter
+## filter.threshold.level = ALL
+
+appender.console.type = Console
+appender.console.name = OUT
+appender.console.target = SYSTEM_OUT
+appender.console.layout.type = PatternLayout
+## appender.console.layout.pattern = %d{HH:mm:ss} %-5p %-15c{1} :: %m%n
+## Include date.
+appender.console.layout.pattern = [%d{yyyy-MM-dd HH:mm:ss}] %-5p %-15c{1} :: %m%n
+
+## To a file.
+## appender.file.type = File
+## appender.file.name = FILE
+## appender.file.fileName=/fuseki/logs/log.fuseki
+## appender.file.layout.type=PatternLayout
+## appender.file.layout.pattern = [%d{yyyy-MM-dd HH:mm:ss}] %-5p %-15c{1} :: %m%n
+
+rootLogger.level                  = INFO
+rootLogger.appenderRef.stdout.ref = OUT
+
+logger.jena.name  = org.apache.jena
+logger.jena.level = INFO
+
+logger.arq-exec.name  = org.apache.jena.arq.exec
+logger.arq-exec.level = INFO
+
+logger.riot.name  = org.apache.jena.riot
+logger.riot.level = INFO
+
+logger.fuseki.name  = org.apache.jena.fuseki
+logger.fuseki.level = INFO
+
+logger.fuseki-fuseki.name  = org.apache.jena.fuseki.Fuseki
+logger.fuseki-fuseki.level = INFO
+
+logger.fuseki-server.name  = org.apache.jena.fuseki.Server
+logger.fuseki-server.level = INFO
+
+logger.fuseki-admin.name  = org.apache.jena.fuseki.Admin
+logger.fuseki-admin.level = INFO
+
+logger.jetty.name  = org.eclipse.jetty
+logger.jetty.level = WARN
+
+# May be useful to turn up to DEBUG if debugging HTTP communication issues
+logger.apache-http.name   = org.apache.http
+logger.apache-http.level  = WARN
+
+logger.shiro.name = org.apache.shiro
+logger.shiro.level = WARN
+# Hide bug in Shiro 1.5.x
+logger.shiro-realm.name = org.apache.shiro.realm.text.IniRealm
+logger.shiro-realm.level = ERROR
+
+# This goes out in NCSA format
+appender.plain.type = Console
+appender.plain.name = PLAIN
+appender.plain.layout.type = PatternLayout
+appender.plain.layout.pattern = %m%n
+
+logger.request-log.name                   = org.apache.jena.fuseki.Request
+logger.request-log.additivity             = false
+logger.request-log.level                  = OFF
+logger.request-log.appenderRef.plain.ref  = PLAIN

shiro.ini

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+#   Licensed to the Apache Software Foundation (ASF) under one or more
+#   contributor license agreements.  See the NOTICE file distributed with
+#   this work for additional information regarding copyright ownership.
+#   The ASF licenses this file to You under the Apache License, Version 2.0
+#   (the "License"); you may not use this file except in compliance with
+#   the License.  You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+
+[main]
+# Development
+ssl.enabled = false
+
+plainMatcher=org.apache.shiro.authc.credential.SimpleCredentialsMatcher
+#iniRealm=org.apache.shiro.realm.text.IniRealm
+iniRealm.credentialsMatcher = $plainMatcher
+
+#localhost=org.apache.jena.fuseki.authz.LocalhostFilter
+
+[users]
+# Implicitly adds "iniRealm =  org.apache.shiro.realm.text.IniRealm"
+# The admin password will be replaced by value of ADMIN_PASSWORD
+# variable by docker-entrypoint.sh on FIRST start up.
+admin=${ADMIN_PASSWORD}
+
+[roles]
+
+[urls]
+## Control functions open to anyone
+/$/status = anon
+/$/ping   = anon
+
+## and the rest are restricted
+/$/** = authcBasic,user[admin]
+
+## Sparql update is restricted
+/*/update/** = authcBasic,user[admin]
+
+
+## If you want simple, basic authentication user/password
+## on the operations,
+##    1 - set a password in [users]
+##    2 - change the line above to:
+## /$/** = authcBasic,user[admin]
+## and set a better
+
+## or to allow any access.
+##/$/** = anon
+
+# Everything else
+/**=anon