Add pages for all orgmycology orgs

This additional creates organization pages for every organization
mentioned in Org Mycology's Scientific Open Source Software Landscape
document and organizes them by the sections detailed in the
corresponding venn diagram

.gitignore

@@ -1 +1,2 @@
 node_modules
+_build/

organizations/2i2c.md

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+# 2i2c Overview
+
+- **Website:** [2i2c](https://2i2c.org/)
+
+## Overview:
+
+2i2c is a non-profit initiative that seeks to enhance and advocate for interactive computing in scientific research and education. It fosters the creation of open-source infrastructure and user-friendly interfaces to simplify the process of data analysis and visualization for scientific communities. With a mission defined by principles like open source, community-driven development, and accessibility, 2i2c contributes to open source projects and builds technologies that benefit the scientific community and beyond. 

organizations/academic-data-science-alliance.md

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+# Academic Data Science Alliance Overview
+
+- **Website:** [Academic Data Science Alliance](https://academicdatascience.org/)
+
+## Overview:
+
+The Academic Data Science Alliance (ADSA) is a global organization committed to advancing academic data science by fostering collaboration, promoting innovation, and providing resources and support for educators and researchers. This alliance encourages the application of data science research in academia and supports open visibility in scientific investigation. As per their commitment to scientific open source, ADSA upholds an open model of operation, supporting open source software and encouraging open access publishing. This allows for the sharing of tools, methods, and knowledge across different disciplines, thereby facilitating more widespread and efficient scientific exploration. 

organizations/alan-turing-institute.md

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+# Alan Turing Institute Overview
+
+- **Website:** [Alan Turing Institute](https://www.turing.ac.uk/)
+
+## Overview:
+
+The Alan Turing Institute is the United Kingdom's national institute for data science and artificial intelligence. Named after Alan Turing, the renowned British mathematician and logician, the institute is dedicated to advancing world-class research in data science and artificial intelligence, and driving their impact on industry, society and education. Through partnerships with several universities and businesses, the institute aims to conduct research that is geared at solving real-world problems. Although the institute's website doesn't specifically mention a focus on scientific open source, their championing of collaborative research and commitment to sharing knowledge suggest an alignment with open source principles. They also host a wide range of events and activities that promote knowledge sharing and collaboration in the scientific community. 

organizations/american-association-for-the-advancement-of-science.md

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+# American Association for the Advancement of Science (AAAS) Overview
+
+- **Website:** [American Association for the Advancement of Science (AAAS)](https://www.aaas.org/)
+
+## Overview:
+
+The American Association for the Advancement of Science (AAAS) is one of the world's foremost international non-profit organizations dedicated to advancing science, engineering, and innovation for the benefit of all people. AAAS acts as a voice for science on societal issues, providing a platform for scientific debate and promoting collaboration among scientists. While AAAS does not explicitly dedicate itself to promoting open-source science, it does champion transparency, integrity, and inclusivity in scientific practices. Through its high-impact journals and publications, which are accessible on their website, AAAS ensures that innovative research findings are widely disseminated, a mission that aligns with the open source philosophy of promoting collaborative development and free distribution of intellectual resources. 

organizations/american-astronomical-society.md

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+# American Astronomical Society Overview
+
+- **Website:** [American Astronomical Society](https://aas.org/)
+
+## Overview:
+
+The American Astronomical Society (AAS) is a leading organization for scientists and enthusiasts dedicated to understanding the universe. They play a vital role in promoting and advancing the field of astronomy and related branches globally. AAS supports open source initiatives and encourages its members to contribute to open-access scientific solutions. Through their website, aas.org, they provide resources and information about their commitment to fostering openness in scientific research and providing avenues for their community to engage in and benefit from such initiatives. They believe that open source software promotes scientific advancement by enabling open collaboration, decentralization, transparency, and reproducibility in research. 

organizations/american-chemical-society.md

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+# American Chemical Society Overview
+
+- **Website:** [American Chemical Society](https://www.acs.org/)
+
+## Overview:
+
+The American Chemical Society (ACS) is a scientific society based in the United States that supports scientific research and education in the field of chemistry. Through its numerous publications, ACS provides access to a huge repository of research data and findings. While ACS subscribes to a traditional publication model, some of its journals offer an open access option under ACS AuthorChoice program. According to the ACS website, this program allows authors or their funding institutions to pay a fee to provide free access to their articles immediately upon publication. It encourages the wider dissemination of scientific information, aligning with principles of open source in science. 

organizations/american-geophysical-union.md

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+# American Geophysical Union (AGU) Overview
+
+- **Website:** [American Geophysical Union (AGU)](https://www.agu.org/)
+
+## Overview:
+
+The American Geophysical Union (AGU) is a nonprofit organization dedicated to promoting the understanding of Earth and space science for the benefit of humanity. It does this through scholarly dissemination, collaboration, and education. According to their website, AGU supports the use of scientific open-source software and data, as they consider it a crucial resource to accelerate scientific discovery and broaden participation in Earth and space science. They also have policies in place which promote full and open exchange of data, recognizing its importance in replicating and validating scientific results. 

organizations/american-physical-society.md

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+# American Physical Society (APS) Overview
+
+- **Website:** [American Physical Society (APS)](https://www.aps.org/)
+
+## Overview:
+
+The American Physical Society (APS) is a non-profit organization dedicated to the advancement and diffusion of the knowledge of physics, aiming to benefit humanity. With over 55,000 members globally, APS is one of the world's largest organizations of physicists. While APS is not specifically an open-source organization, they support the open sharing of scientific knowledge and research through their various publications and meetings. They provide authoritative reports, standards, and guidelines, many of which are openly available on their website. In addition, APS encourages practices that increase the reproducibility and transparency of physics research, indirectly promoting the use of open source tools and methodologies. 

organizations/american-psychological-association.md

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+# American Psychological Association (APA) Overview
+
+- **Website:** [American Psychological Association (APA)](https://www.apa.org/)
+
+## Overview:
+
+The American Psychological Association (APA) is a scientific and professional organization that represents psychology in the United States. It seeks to advance the creation, communication, and application of psychological knowledge to benefit society and improve people's lives. While the APA itself does not create open-source software, it supports the principles of open access to scientific research and data and advocates for psychological researchers' contributions to the open science movement. On their website (https://www.apa.org/), they provide multiple resources about the importance of open practices in psychological research, including guides on pre-registration and data sharing principles. 

organizations/american-society-for-microbiology.md

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+# American Society for Microbiology Overview
+
+- **Website:** [American Society for Microbiology](https://asm.org/)
+
+## Overview:
+
+The American Society for Microbiology (ASM) is one of the largest professional organizations dedicated to advancing microbiological sciences. Through research, education, and advocacy, ASM supports and enhances microbial science, promoting its critical role in healthcare, environment, and basic research. According to their website, ASM has a commitment to open science, evidenced by their open-access journals and resources that accelerate the advancement of science and its direct application. They support the scientific open source by sharing high-quality research data and findings freely, fostering collaboration and innovation in the scientific community. 

organizations/apache-software-foundation.md

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+# Apache Software Foundation Overview
+
+- **Website:** [Apache Software Foundation](https://www.apache.org/)
+
+## Overview:
+
+The Apache Software Foundation (ASF) is a decentralized community of developers focused on creating, stewarding, and incubating a broad range of open source software projects. The foundation's products serve as key resources in many scientific open-source applications. ASF not only promotes open-source methodologies but also provides legal protection to its projects, encouraging scientific community to use and contribute to the open-source projects. As per their official website (https://www.apache.org/), their projects range from enterprise-level servers, developing libraries, desktop-end software, to Big Data and science tools, providing a collaborative software development environment to welcome contributions from scientists across the globe. 

organizations/association-for-computing-machinery.md

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+# Association for Computing Machinery (ACM) Overview
+
+- **Website:** [Association for Computing Machinery (ACM)](https://www.acm.org/)
+
+## Overview:
+
+The Association for Computing Machinery (ACM) is an international learned society for computing. Its objectives are to advance and promote the science and art of information processing. As documented on their website (https://www.acm.org/), ACM provides the computing field's premier Digital Library and serves its members and the computing profession with leading-edge publications, conferences, and career resources. In relation to scientific open source, ACM promotes and celebrates the use of open source in scientific research and development. They often publish open source-related research and hold conferences on the topic, showing their support for the open source philosophy in the scientific computing community. 

organizations/astropy.md

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+# Astropy Overview
+
+- **Website:** [Astropy](https://www.astropy.org/)
+
+## Overview:
+
+Astropy is a community-developed Python package dedicated to the processing and analysis of astronomical data. It is also a key player in the scientific open-source community, promoting the use of Python for astronomical research. The project aims to foster an ecosystem of interoperable astronomy packages and actively supports community-driven efforts. As outlined on its website, Astropy not only provides a core package for astronomy-specific computations and data analysis, but also works in coordination with several affiliated packages dedicated to a diverse range of astronomy and astrophysics applications. 

organizations/bioconductor.md

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+# Bioconductor Overview
+
+- **Website:** [Bioconductor](https://www.bioconductor.org/)
+
+## Overview:
+
+Bioconductor is an open source project that provides software for the analysis and comprehension of high-throughput genomic data. It has a large collection of tools for bioinformatics and areas of statistical research. These resources can be freely used to conduct and disseminate scientific research. Its project design and strong user community is based on active participation, with software packages undergoing a standard peer-review process promoting software reliability. Public accessibility of the source code through their website (https://www.bioconductor.org/), promotes transparency and reproducibility of the scientific research. 

organizations/center-for-scientific-collaboration-and-community-engagement.md

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+# Center for Scientific Collaboration and Community Engagement (CSCCE) Overview
+
+- **Website:** [Center for Scientific Collaboration and Community Engagement (CSCCE)](https://www.cscce.org/)
+
+## Overview:
+
+The Center for Scientific Collaboration and Community Engagement (CSCCE) is a professional organization dedicated to studying and nurturing effective collaboration and community building in scientific research. Using world-class training approaches, the CSCCE helps various members of the scientific community improve their abilities in managing and evaluating scientific collaborations. Although not strictly focused on open source, CSCCE advocates for the principles of transparency, community participation, and collaboration - values that stem from scientific open source ethos - in scientific endeavors. 

organizations/creative-commons.md

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+# Creative Commons Overview
+
+- **Website:** [Creative Commons](https://creativecommons.org/)
+
+## Overview:
+
+Creative Commons is a nonprofit organization that provides free, flexible copyright licenses to enable creators to legally share their creative work while preserving their rights. They provide a range of licensing options that creators can use to manage their copyright terms in the digital age. Creative Commons licenses are frequently applied in the scientific field, especially for scientific open source projects. These licenses allow scientists to share their research and findings openly, while maintaining control over their work's usage and ensuring proper attributions. This openness promotes collaboration and accelerates scientific advancement by making the research available to all. 

organizations/ecological-society-of-america.md

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+# Ecological Society of America Overview
+
+- **Website:** [Ecological Society of America](https://www.esa.org/)
+
+## Overview:
+
+The Ecological Society of America (ESA) is a professional membership-based organization of ecologists that focuses on promoting the science and study of ecology. While the organization does not directly work with scientific open source, it does further the cause of open scientific dialogue through the publication of a range of journals and bulletins that cover various aspects of ecological research and discovery. They maintain high standards of transparency and credibility, placing emphasis on the dissemination of ecological knowledge through their online platform, as referenced on their website https://www.esa.org/. ESA promotes scientific literacy and encourages innovative ecological research, supporting a collaborative spirit among ecological scientists. 

organizations/electronic-frontier-foundation.md

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+# Electronic Frontier Foundation (EFF) Overview
+
+- **Website:** [Electronic Frontier Foundation (EFF)](https://www.eff.org/)
+
+## Overview:
+
+The Electronic Frontier Foundation (EFF) is a leading nonprofit organization advocating for civil liberties and privacy rights within the digital world. As per their website (https://www.eff.org/), they aim to ensure that rights and freedoms are protected as the use of technology grows. While they don't primarily focus on open source science, EFF supports the principles of transparency, collaborative development, and the unrestricted sharing of information that the open source model embodies. They also actively defend digital rights, which indirectly aids open source data and knowledge sharing by preserving internet freedoms and fighting against restrictive copyright and patent laws. EFF believes these principles contribute to the public good, encourage innovation, and promote scientific advancement. 

organizations/european-space-agency.md

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+# European Space Agency (ESA) Overview
+
+- **Website:** [European Space Agency (ESA)](https://www.esa.int/)
+
+## Overview:
+
+The European Space Agency (ESA) is an international institution dedicated to the exploration of space, with 22 member states. ESA carries out a variety of activities from human spaceflight to the design of unmanned exploration missions to the outer planets. The organization also supports the use of open source software and principles, initiated by their ESA's Open Science Initiative, to enhance the transparency, integrity and accessibility of scientific research. As per their website, they have hosted several events promoting open source, including hosting hackathons, and have dedicated portals where data from their missions are made freely available to the public. 

organizations/free-software-foundation.md

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+# Free Software Foundation (FSF) Overview
+
+- **Website:** [Free Software Foundation (FSF)](https://www.fsf.org/)
+
+## Overview:
+
+The Free Software Foundation (FSF) is a non-profit organization founded in 1985, dedicated to promoting computer user freedom by defending the rights of software users. It is a guiding light in the free software movement, advocating for the freedom to use, study, copy, modify, and redistribute computer software. While not directly focused on scientific open source, the FSF indirectly supports it through its endorsement of free software, which can be beneficial for scientific use. Its principles align with the goals of scientific open-source in terms of promoting collaboration, transparency, and freedom to use and modify the software. Through their licensing programs, FSF certifies open-source software that guarantees these freedoms. Any scientific open-source software following these licenses would be positively related to FSF's principles. 

organizations/index.md

@@ -42,3 +42,58 @@ Sorted alphabetically.
 - HELIOS
 - RDA
 - **[Outreachy](./outreachy.md)**
+
+## Organization Mycology Scientific Open Source Software Landscape
+
+The following section's organizations are referenced from the Org Mycology Scientific Open Source Software Landscape diagram. This data was originally collected via the open source repository which can be found on [GitHub](https://github.com/orgmycology/scienceosslandscape/tree/main). 
+
+### Science Policy
+- **[American Chemical Society (ACS)](./american-chemical-society.md)**  
+- **[American Geophysical Union (AGU)](./american-geophysical-union.md)**  
+- **[American Psychological Association (APA)](./american-psychological-association.md)**  
+- **[American Society for Microbiology](./american-society-for-microbiology.md)**  
+- **[Association for Computing Machinery (ACM)](./association-for-computing-machinery.md)**  
+- **[Ecological Society of America (ESA)](./ecological-society-of-america.md)**  
+- **[Institute of Electrical and Electronics Engineers (IEEE)](./institute-of-electrical-and-electronics-engineers.md)**  
+- **[American Physical Society (APS)](./american-physical-society.md)**  
+- **[American Association for the Advancement of Science (AAAS)](./american-association-for-the-advancement-of-science.md)**  
+- **[European Space Agency (ESA)](./european-space-agency.md)**  
+- **[Molecular Sciences Software Institute (MolSSI)](./molecular-sciences-software-institute.md)**  
+
+### Scientific Software
+- **[Python Software Foundation](./psf.md)**
+- **[SciPy](./numfocus.md)**  
+- **[Matplotlib](./matplotlib.md)**  
+- **[Astropy](./astropy.md)**  
+- **[Bioconductor](./bioconductor.md)**  
+- **[Julia Language](./julia-language.md)**  
+- **[2i2c](./2i2c.md)**  
+
+### Leadership Education
+- **[Academic Data Science Alliance](./academic-data-science-alliance.md)**  
+- **[UK Software Sustainability Institute](./uk-software-sustainability-institute.md)**  
+- **[Research Software Engineers (RSE)](./research-software-engineers.md)**  
+
+### Software Education
+- **[Open Life Science](./open-life-science.md)**  
+- **[The Carpentries](./the-carpentries.md)**  
+- **[NumFOCUS](./numfocus.md)**  
+- **[pyOpenSci](./pyopensci.md)**  
+- **[The Turing Way](./the-turing-way.md)**  
+- **[rOpenSci](./ropensci.md)**  
+
+### Software
+- **[NumPy](./numpy.md)**  
+- **[NumFOCUS](./numfocus.md)**  
+- **[PyTorch](./pytorch.md)**  
+- **[Project Jupyter](./project-jupyter.md)**  
+
+### Leadership
+- **[OSPO++](./ospoplusplus.md)**  
+- **[URSSI](./urssi.md)**  
+- **[Science Gateways Community Institute (SGCI)](./science-gateways-community-institute.md)**  
+- **[SustainOSS](./sustainoss.md)**  
+
+### Science 
+- **[NASA](./national-aeronautics-and-space-administration.md)**  
+- **[Space Telescope Science Institute (STScI)](./space-telescope-science-insitute.md)**