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add PR number to each news line
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@ngranda
ngranda committed Jan 13, 2020
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**Added:**

* Tool for checking DagMC models for overlaps.
* Note on adding DagMC libraries to LD_LIBRARY_PATH for OpenMC usage
* Link to installation instructions for OpenMC with DagMC
* Documentation section on material assignment by name for OpenMC model prep.
* MCNP6 version of pyne mesh source.F90
* Documentation on model prep for OpenMC simulations with a DAGMC geometry
* Added a script which updates amalgamated pyne
* Tool for checking DagMC models for overlaps. (PR#641)
* Note on adding DagMC libraries to LD_LIBRARY_PATH for OpenMC usage. (PR#625)
* Link to installation instructions for OpenMC with DagMC. (PR#625)
* Documentation section on material assignment by name for OpenMC model
prep. (PR#616)
* MCNP6 version of pyne mesh source.F90. (PR#604)
* Documentation on model prep for OpenMC simulations with a DAGMC
geometry. (PR#599)
* Added a script which updates amalgamated pyne. (PR#595)
* OpenMC material writing capability for UWUW workflow via updates to the
amalgamated PyNE source.
* Community best practices including issue templates, pull request templates, contributing guidelines, and code of conduct.
amalgamated PyNE source. (PR#594)
* Community best practices including issue templates, pull request templates,
contributing guidelines, and code of conduct. (PR#589)
* Added PyNE mesh source routine functionality. This can be enabled by setting
the ``BUILD_MCNP_PYNE_SOURCE`` compiler definition to ``ON``.
* Added ability for users to disable building static or shared libraries
* Patch file for DAG-MCNP6.2
the ``BUILD_MCNP_PYNE_SOURCE`` compiler definition to ``ON``. (PR#585)
* Added ability for users to disable building static or shared libraries (PR#572)
* Patch file for DAG-MCNP6.2 (PR#569)
* Default to a Release build. This results in optimization flags being used
everywhere as appropriate.
* Note that MCNP is still configured to use no more than ``-O1``.
everywhere as appropriate. (PR#555)
* Note that MCNP is still configured to use no more than ``-O1``
* Add macros to ``cmake/DAGMC_macros.cmake``. This results in much less
duplicated cmake elsewhere. The following macros were added:
duplicated cmake elsewhere. The following macros were added: (PR#555)
* ``dagmc_setup_build``: Sets core variables used throughout the rest of the
project.
* ``dagmc_setup_options``: Defines cmake build options.
Expand All @@ -30,164 +33,170 @@
* ``dagmc_install_exe``: Install an executable.
* ``dagmc_install_test``: Install a unit test.
* ``dagmc_install_test_file``: Install a file needed for unit testing.
* Add a ``FindFluka.cmake`` file to find the Fluka library.
* Add a ``FindFluka.cmake`` file to find the Fluka library. (PR#555)
* Add ``RPATH`` functionality so that all executables and libraries
automatically know where their dependencies are located. This removes the need
for users to add anything to their ``LD_LIBRARY_PATH``. This can be turned off
by setting ``-DBUILD_RPATH=OFF``.
by setting ``-DBUILD_RPATH=OFF``. (PR#555)
* Add ability to build with position-independent code (PIC). This can be turned
on by setting ``-DBUILD_PIC=ON``.
on by setting ``-DBUILD_PIC=ON``. (PR#555)
* Add options to enable/disable building all optional functionality. The
following options were added:
following options were added: (PR#555)
* ``BUILD_BUILD_OBB``
* ``BUILD_MAKE_WATERTIGHT``
* ``BUILD_TESTS``
* Documentation explaining the new requirement that all PRs must include a file
explaining what the PR does
* Template for the news directory
explaining what the PR does. (PR#545)
* Template for the news directory. (PR#545)

**Changed:**

* Changed name of overlap_check executable directory from "build" to "app".
* all directories named `build` are changed to `app` for clarity
* ``dagmc/src/make_watertight``: now accepting output_filename
* ``dagmc/src/check_watertight``: now accepting output_filename
* Changed name of overlap_check executable directory from "build" to
"app". (PR#653)
* all directories named `build` are changed to `app` for clarity. (PR#645)
* ``dagmc/src/make_watertight``: now accepting output_filename. (PR#636)
* ``dagmc/src/check_watertight``: now accepting output_filename. (PR#636)
* Have the update_pyne script copy over the source.F90 files in pyne for MCNP5
and MCNP6
* Update amalgamated pyne
* Updated amalgamated pyne
and MCNP6. (PR#626)
* Update amalgamated pyne. (PR#626)
* Updated amalgamated pyne. (PR#617)
* The `ASTYLE_ONLY` Travis variable has been replaced with a `HOUSEKEEPING_ONLY`
variable. If this variable is on, DAGMC will not be built and it will instead
only perform 3 housekeeping checks:
only perform 3 housekeeping checks: (PR#610)
* News file: the CI will fail if a news file with the correct filename is not
included.
* Astyle: the version of astyle we use on the CI has been upgraded to 3.1.
This is the version that is default on Ubuntu 18.04.
* Documentation: the CI will now attempt to build the DAGMC documentation and
will fail if it finds any errors or warnings.
* The dockerfile has been modified so that it can be built with both Ubuntu
16.04 and 18.04.
16.04 and 18.04. (PR#610)
* The docker images have been moved from the cnerg dockerhub organization to the
svalinn organization.
* The new build matrix for the non-housekeeping run is 2x2x2:
svalinn organization. (PR#610)
* The new build matrix for the non-housekeeping run is 2x2x2: (PR#610)
* Ubuntu 16.04 vs. 18.04
* gcc vs. clang
* gcc-5.3 on 16.04; gcc-7.3 on 18.04
* clang-3.8 on 16.04; clang-6.0 on 18.04
* MOAB 5.1.0 vs. master vs. develop
* The builds that use MOAB master and develop are allowed to fail without the
entire CI failing. The CI will show as having passed once the housekeeping
build and the four MOAB 5.1.0 builds have passed.
build and the four MOAB 5.1.0 builds have passed. (PR#610)
* The CI will only build against MOAB master and develop during non-pull request
builds; i.e. only during push builds and nightlies
builds; i.e. only during push builds and nightlies. (PR#610)
* MOAB 5.1.0 is now included in the docker image so it does not need to be built
every time the CI is run.
every time the CI is run. (PR#610)
* This is to save time, since we expect that previous versions of MOAB will
not change. If it does change, we can update the Docker images.
* MOAB master is still built every time it is needed.
* MOAB is now built with pymoab support. This is for future-proofing in case
DAGMC ever needs access to this functionality.
DAGMC ever needs access to this functionality. (PR#610)
* MOAB is now built against both custom-built HDF5 (1.10.4, up from 1.8.13) and
against system HDF5.
against system HDF5. (PR#610)
* The MOAB built against system HDF5 is currently unused, however, as there is
currently a bug that makes it so DAGMC cannot build static executables if
using system HDF5. If/when this bug is fixed, then building DAGMC with
system HDF5 can be added to the build matrix.
* Geant4 has been upgraded to version 10.5.
* Geant4 has been upgraded to version 10.5. (PR#610)
* Building the documentation will throw an error if it encounters any warnings
or errors. The previous warnings and errors that were occurring have been
fixed.
fixed. (PR#610)
* Throw a fatal error if trying to build static executables but not static
libraries, or shared executables but not shared libraries
libraries, or shared executables but not shared libraries. (PR#605)
* Added measure and source_sampling to amalgamated pyne and removed the
standalone files we used to use
* Move keyword type to FC card in the document doc/userguide/tally.rst
* A small change to a single line of the dag-mcnp model prep file.
* ``CMakeLists.txt``
* ``src/mcnp/meshtal_funcs.cpp``
* ``src/tally/KDEMeshTally.cpp``
* ``src/tally/MeshTally.cpp``
* ``src/tally/MeshTally.hpp``
* ``src/tally/MeshTally.hpp``
* ``src/tally/TallyData.cpp``
* ``src/tally/TrackLengthMeshTally.cpp``
* Updated amalgamated pyne to match the main pyne repo
* Travis CI no longer attempts to build DAGMC against moab master
standalone files we used to use. (PR#604)
* Move keyword type to FC card in the document doc/userguide/tally.rst.
(PR#600)
* A small change to a single line of the dag-mcnp model prep file. (PR#599)
* ``CMakeLists.txt`` (PR#597)
* ``src/mcnp/meshtal_funcs.cpp`` (PR#597)
* ``src/tally/KDEMeshTally.cpp`` (PR#597)
* ``src/tally/MeshTally.cpp`` (PR#597)
* ``src/tally/MeshTally.hpp`` (PR#597)
* ``src/tally/MeshTally.hpp`` (PR#597)
* ``src/tally/TallyData.cpp`` (PR#597)
* ``src/tally/TrackLengthMeshTally.cpp`` (PR#597)
* Updated amalgamated pyne to match the main pyne repo. (PR#595)
* Travis CI no longer attempts to build DAGMC against moab master. (PR#584)
* When configuring MPI-enabled DAG-MCNP6, do not rely on
``MPI_Fortran_INCLUDE_PATH`` being set because this variable is not set when
using CMake 3.10 or newer. Instead, use ``MPI_Fortran_COMPILER``.
using CMake 3.10 or newer. Instead, use ``MPI_Fortran_COMPILER``. (PR#579)
* Use the values of ``MOAB_INCLUDE_DIRS`` and ``MOAB_LIBRARY_DIRS`` from
``MOABConfig.cmake`` instead of trying to determine them ourselves. Note that
this change makes DAGMC incompatible with MOAB 5.0.
* Use MOAB 5.1.0 on CI instead of 5.0.
* CMakeFile for DAG-MCNP6 to accomodate MCNP6.2
* Use bind(c) in fmesh_mod.F90 to avoid the need for name mangling on the C++ side
* Rename MCNP patch files to mcnpXXX.patch, where XXX is the version turned into a 3-digit number
this change makes DAGMC incompatible with MOAB 5.0. (PR#578)
* Use MOAB 5.1.0 on CI instead of 5.0. (PR#578)
* CMakeFile for DAG-MCNP6 to accomodate MCNP6.2. (PR#569)
* Use bind(c) in fmesh_mod.F90 to avoid the need for name mangling on the C++
side. (PR#556)
* Rename MCNP patch files to mcnpXXX.patch, where XXX is the version turned
into a 3-digit number. (PR#556)
* Change pretty much every ``CMakeLists.txt`` file in the entire repo to use the
new macros. Almost all the cmake files got much shorter because of this
change.
change. (PR#555)
* Change how we find HDF5. Previously, HDF5 was required to be in users'
``$PATH``. Now, the location of HDF5 is determined automatically by reading
variables from ``MOABConfig.cmake``.
variables from ``MOABConfig.cmake``. (PR#555)
* Change how we find MOAB. Previously, MOAB was required to be in users'
``$LD_LIBRARY_PATH``. Now, users must specify ``-DMOAB_DIR`` when running
cmake.
cmake. (PR#555)
* Note that the ``MOABConfig.cmake`` file is no longer used to find any MOAB
files.
* Since users no longer need to change their ``$PATH`` or ``$LD_LIBRARY_PATH``,
remove the changes to those variables in the CI scripts.
remove the changes to those variables in the CI scripts. (PR#555)
* Rename the cmake commands used to build DAG-MCNP5/6 with plotting and MPI
support. The new commands are ``BUILD_MCNP_PLOT`` and ``BUILD_MCNP_MPI``.
(PR#555)
* Rename the cmake command used to build static executables from
``BUILD_STATIC`` to ``BUILD_STATIC_EXE``. The old name was confusing because
the option only controls the linking of executables, while libraries are
always built both static and dynamic.
always built both static and dynamic. (PR#555)
* Rename the ``test`` folders in ``src/dagmc`` and ``src/mcnp`` to ``tests`` to
conform with other unit test directories.
conform with other unit test directories. (PR#555)
* Move the source files for the make_watertight and uwuw_preproc executables
into a new ``build`` directory, keeping the source files for the library where
they are. This conforms with other DAGMC features that have both a library and
an executable.
* Replace the mcnpfuncs internal library with an object library.
an executable. (PR#555)
* Replace the mcnpfuncs internal library with an object library. (PR#555)
* For the pyne_dagmc library, only use ``-O0`` optimzation when building with
Intel C++.
* Update documentation to reflect all changes.
* Moved all source code into the ``src`` directory
* Fix download link to astyle 3.0.1 .deb file
Intel C++. (PR#555)
* Update documentation to reflect all changes. (PR#555)
* Moved all source code into the ``src`` directory. (PR#552)
* Fix download link to astyle 3.0.1 .deb file. (PR#549)
* Direct Travis to grab the docker image from the cnerg dockerhub account
instead of Lucas's account
instead of Lucas's account. (PR#546)

**Deprecated:** None

**Removed:**

* Remove the ``FindHDF5.cmake`` file as it is no longer needed.
* Remove the ``FindHDF5.cmake`` file as it is no longer needed. (PR#555)
* ``gtest/README`` and ``gtest/configure.sh``: no longer used; last commit in
March 2014
* ``tools/build/*``: no longer used; last commit in June 2014
* ``cmake/FindPyne.cmake``: no longer used; last commit in June 2014
* ``tools/finish_dagmc_geom*``: out of date; last commit in June 2014
* ``tools/txcorp_bld/*``: no idea what this is; last commit in June 2014
* ``tools/dagmc_tag_eg/*``: out of date; last commit in October 2014
* ``tally/tools/boundary_correction/*``: broken; last commit in June 2016
March 2014. (PR#544)
* ``tools/build/*``: no longer used; last commit in June 2014. (PR#544)
* ``cmake/FindPyne.cmake``: no longer used; last commit in June 2014. (PR#544)
* ``tools/finish_dagmc_geom*``: out of date; last commit in June 2014. (PR#544)
* ``tools/txcorp_bld/*``: no idea what this is; last commit in June 2014. (PR#544)
* ``tools/dagmc_tag_eg/*``: out of date; last commit in October 2014. (PR#544)
* ``tally/tools/boundary_correction/*``: broken; last commit in June 2016. (PR#544)

**Fixed:**

* Regenerate the DAGMC_LIBRARIES variable upon re-running cmake
* Regenerate the DAGMC_LIBRARIES variable upon re-running cmake. (PR#643)
* Fix error in documentation where cmake was not pointing to the DAGMC source
dir as it should
* Updated links to OpenMC documentation
* Make the MW_REG_TEST_MODELS_URL variable available to the docker image
dir as it should. (PR#632)
* Updated links to OpenMC documentation. (PR#630)
* Make the MW_REG_TEST_MODELS_URL variable available to the docker image. (PR#621)
* The `make_watertight_regression_tests` should now be run if the CI is not
doing a PR build.
doing a PR build. (PR#610)
* I believe this was broken for an undetermined amount of time; I do not
believe they were ever getting run regardless of whether the CI was doing a
PR build or not. This is because intrinsic Travis variables like
`$TRAVIS_PULL_REQUEST` are only available to `.travis.yml`; if they are
needed in other scripts, they need to be passed manually, and this was not
happening before.
* Fixes issue with unstructured mesh tallies.
* Now produces a vector tag of size num_groups instead of num_groups+2 scalar tags.
* Also produces a total tally tag
* Fixes issue with unstructured mesh tallies. (PR#597)
* Now produces a vector tag of size num_groups instead of num_groups+2 scalar
tags. (PR#597)
* Also produces a total tally tag. (PR#597)

**Security:** None

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