Skip to content

Commit

Permalink
Some format changes
Browse files Browse the repository at this point in the history
  • Loading branch information
benli committed Jan 29, 2021
1 parent e9f2ee4 commit 9c4db2d
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ Qiime 2 (https://qiime2.org/)

Setup:
1. Clone the package using "git clone https://github.com/swiftbiosciences/q2_ITS.git"
to get following files: q2wkflow_ITS_ver3.sh,
to get following files: q2wkflow_ITS_ver3.sh,
mergeStrand_taxonomy.py, config_SNAP_ITS.txt, primer file, and reference
file (1) for the naive baysian classifier using UNITE ITS reference
version 8.
Expand All @@ -16,7 +16,7 @@ Setup:
merged reads (recommended for longer read lengths, e.g. 2X250, 2X300).

Command to run:
q2wkflow_ITS_ver3.sh config_SNAP_ITS.txt inputdir workdir
q2wkflow_ITS_ver3.sh config_SNAP_ITS.txt inputdir workdir

3. Results organization: ASV feature table can be found in "Export" directory;
"QObj" directory contains intermediate files and tables some of which could
Expand Down

0 comments on commit 9c4db2d

Please sign in to comment.