swig #203
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| name: Tests | |
| on: | |
| # Trigger on push or pull request events for the master branch | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Run the workflow Sundays at 0400 UTC | |
| schedule: | |
| - cron: '0 4 * * 0' | |
| # Allow running the workflow manually from the Actions tab | |
| workflow_dispatch: | |
| inputs: | |
| run_name: | |
| description: 'Name of workflow run as it will appear under Actions tab (optional):' | |
| type: string | |
| required: false | |
| default: '' | |
| job_name: | |
| description: 'Select a job from the matrix to run (default: all jobs)' | |
| type: choice | |
| options: | |
| - '' | |
| - 'Ubuntu Baseline' | |
| - 'Ubuntu Baseline, no MPI' | |
| - 'MacOS Baseline' | |
| - 'Ubuntu Latest' | |
| - 'Ubuntu Oldest' | |
| - 'Ubuntu Baseline, no MPI, forced build' | |
| - 'MacOS Baseline, no MPI, forced build' | |
| - 'Ubuntu Latest, no MPI, forced build' | |
| - 'MacOS Baseline on ARM' | |
| required: false | |
| default: '' | |
| debug_enabled: | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| type: boolean | |
| required: false | |
| default: false | |
| run-name: ${{ inputs.run_name }} | |
| jobs: | |
| tests: | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # test baseline versions on Ubuntu | |
| - NAME: Ubuntu Baseline | |
| OS: ubuntu-latest | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| MPICC: 4 | |
| PYOPTSPARSE: 'default' | |
| PAROPT: true | |
| SNOPT: 7.7 | |
| # test baseline versions on Ubuntu without MPI | |
| - NAME: Ubuntu Baseline, no MPI | |
| OS: ubuntu-latest | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PYOPTSPARSE: 'default' | |
| SNOPT: 7.7 | |
| # test baseline versions on MacOS | |
| - NAME: MacOS Baseline | |
| OS: macos-13 | |
| PY: '3.11' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| MPICC: 4 | |
| PYOPTSPARSE: 'default' | |
| PAROPT: true | |
| SNOPT: 7.7 | |
| # test latest versions | |
| - NAME: Ubuntu Latest | |
| OS: ubuntu-latest | |
| PY: 3 | |
| NUMPY: 1 | |
| SCIPY: 1 | |
| MPICC: 4 | |
| PYOPTSPARSE: 'latest' | |
| PAROPT: true | |
| SNOPT: 7.7 | |
| # test oldest supported versions | |
| - NAME: Ubuntu Oldest | |
| OS: ubuntu-latest | |
| PY: 3.8 | |
| NUMPY: 1.22 | |
| SCIPY: 1.7 | |
| PYOPTSPARSE: 'v1.2' | |
| NO_IPOPT: true | |
| SNOPT: 7.2 | |
| # test baseline versions on Ubuntu without MPI with forced build | |
| - NAME: Ubuntu Baseline, no MPI, forced build | |
| OS: ubuntu-latest | |
| PY: '3.12' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PYOPTSPARSE: 'default' | |
| SNOPT: 7.7 | |
| FORCE_BUILD: true | |
| # test baseline versions on MacOS without MPI with forced build | |
| - NAME: MacOS Baseline, no MPI, forced build | |
| OS: macos-12 | |
| PY: '3.11' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PYOPTSPARSE: 'default' | |
| SNOPT: 7.7 | |
| FORCE_BUILD: true | |
| # test latest versions without MPI with forced build | |
| - NAME: Ubuntu Latest, no MPI, forced build | |
| OS: ubuntu-latest | |
| PY: 3 | |
| NUMPY: 1 | |
| SCIPY: 1 | |
| PYOPTSPARSE: 'latest' | |
| SNOPT: 7.7 | |
| FORCE_BUILD: true | |
| # test baseline versions on MacOS latest (ARM64) | |
| # - NAME: MacOS Baseline on ARM | |
| # OS: macos-latest | |
| # PY: '3.12' | |
| # NUMPY: '1.26' | |
| # SCIPY: '1.13' | |
| # MPI4PY: true | |
| # PYOPTSPARSE: 'default' | |
| # PAROPT: true | |
| # SNOPT: 7.7 | |
| runs-on: ${{ matrix.OS }} | |
| name: ${{ matrix.NAME }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Display run details | |
| run: | | |
| echo "=============================================================" | |
| echo "Run #${GITHUB_RUN_NUMBER}" | |
| echo "Run ID: ${GITHUB_RUN_ID}" | |
| echo "Testing: ${GITHUB_REPOSITORY}" | |
| echo "Triggered by: ${GITHUB_EVENT_NAME}" | |
| echo "Initiated by: ${GITHUB_ACTOR}" | |
| echo "=============================================================" | |
| - name: Exit if this job was not selected | |
| if: github.event_name == 'workflow_dispatch' && inputs.job_name != '' && inputs.job_name != matrix.NAME | |
| uses: actions/github-script@v7 | |
| with: | |
| script: core.setFailed('The ${{ matrix.NAME }} job was not included in the run, exiting...'); | |
| - name: Create SSH key | |
| if: matrix.SNOPT | |
| env: | |
| SSH_PRIVATE_KEY: ${{ secrets.SSH_PRIVATE_KEY }} | |
| SSH_KNOWN_HOSTS: ${{ secrets.SSH_KNOWN_HOSTS }} | |
| run: | | |
| mkdir -p ~/.ssh/ | |
| echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa | |
| sudo chmod 600 ~/.ssh/id_rsa | |
| echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: latest | |
| python-version: ${{ matrix.PY }} | |
| channels: conda-forge | |
| channel-priority: true | |
| - name: Install | |
| run: | | |
| conda install numpy=${{ matrix.NUMPY }} scipy=${{ matrix.SCIPY }} compilers cython swig -q -y | |
| python -m ensurepip --upgrade | |
| echo "=============================================================" | |
| echo "Install build_pyoptsparse" | |
| echo "=============================================================" | |
| python -m pip install . | |
| - name: Install MPI | |
| if: matrix.MPICC | |
| run: | | |
| echo "=============================================================" | |
| echo "Install MPI" | |
| echo "=============================================================" | |
| conda install openmpi-mpicc=${{ matrix.MPICC }} mpi4py -q -y | |
| echo "OMPI_MCA_rmaps_base_oversubscribe=1" >> $GITHUB_ENV | |
| - name: Display environment before | |
| run: | | |
| conda info | |
| conda list | |
| echo "=============================================================" | |
| echo "Check installed versions of Python, Numpy and Scipy" | |
| echo "=============================================================" | |
| python -c "import sys; assert str(sys.version).startswith(str(${{ matrix.PY }})), \ | |
| f'Python version {sys.version} is not the requested version (${{ matrix.PY }})'" | |
| python -c "import numpy; assert str(numpy.__version__).startswith(str(${{ matrix.NUMPY }})), \ | |
| f'Numpy version {numpy.__version__} is not the requested version (${{ matrix.NUMPY }})'" | |
| python -c "import scipy; assert str(scipy.__version__).startswith(str(${{ matrix.SCIPY }})), \ | |
| f'Scipy version {scipy.__version__} is not the requested version (${{ matrix.SCIPY }})'" | |
| - name: Build pyOptSparse | |
| run: | | |
| echo "=============================================================" | |
| echo "Build pyoptsparse" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.PYOPTSPARSE }}" == "default" ]]; then | |
| BRANCH="" | |
| elif [[ "${{ matrix.PYOPTSPARSE }}" == "latest" ]]; then | |
| LATEST_URL=`curl -fsSLI -o /dev/null -w %{url_effective} https://github.com/mdolab/pyoptsparse/releases/latest` | |
| LATEST_VER=`echo $LATEST_URL | awk '{split($0,a,"/tag/"); print a[2]}'` | |
| BRANCH="-b $LATEST_VER" | |
| else | |
| BRANCH="-b ${{ matrix.PYOPTSPARSE }}" | |
| fi | |
| if [[ "${{ matrix.PAROPT }}" ]]; then | |
| PAROPT="-a" | |
| fi | |
| if [[ "${{ matrix.SNOPT }}" == "7.7" && "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.7 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_77 }} SNOPT | |
| SNOPT="-s SNOPT/src" | |
| elif [[ "${{ matrix.SNOPT }}" == "7.2" && "${{ secrets.SNOPT_LOCATION_72 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.2 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_72 }} SNOPT | |
| SNOPT="-s SNOPT/source" | |
| elif [[ "${{ matrix.SNOPT }}" ]]; then | |
| echo "SNOPT version ${{ matrix.SNOPT }} was requested but source is not available" | |
| fi | |
| if [[ "${{ matrix.LINEAR_SOLVER }}" == "hsl" ]]; then | |
| if "${{ secrets.HSL_LOCATION }}" ]]; then | |
| scp -q ${{ secrets.HSL_LOCATION }} hsl.tar.gz | |
| LINEAR_SOLVER="-l hsl -t hsl.tar.gz" | |
| else | |
| echo "---------------------------------------------------------------------------" | |
| echo "HSL was requested but source is not available, using default linear solver." | |
| echo "---------------------------------------------------------------------------" | |
| fi | |
| elif [[ "${{ matrix.LINEAR_SOLVER }}" == "pardiso" ]]; then | |
| echo "-------------------------------------------------------------------------------" | |
| echo "Pardiso requires Intel compilers, which are not installed. The build will fail." | |
| echo "-------------------------------------------------------------------------------" | |
| LINEAR_SOLVER="-l pardiso" | |
| fi | |
| if [[ "${{ matrix.NO_IPOPT }}" ]]; then | |
| NO_IPOPT="--no-ipopt" | |
| fi | |
| if [[ "${{ matrix.FORCE_BUILD }}" ]]; then | |
| FORCE_BUILD="--force-build" | |
| fi | |
| echo "build_pyoptsparse -v $BRANCH $FORCE_BUILD $PAROPT $SNOPT $NO_IPOPT $LINEAR_SOLVER" | |
| build_pyoptsparse -v $BRANCH $FORCE_BUILD $PAROPT $SNOPT $NO_IPOPT $LINEAR_SOLVER | |
| echo "BRANCH=${BRANCH}" >> $GITHUB_ENV | |
| - name: Display build log | |
| if: failure() | |
| run: | | |
| for f in $(find /tmp/ -name 'meson-log.txt'); do | |
| echo "=============================================================" | |
| echo $f | |
| echo "=============================================================" | |
| cat $f | |
| done | |
| # Enable tmate debugging of manually-triggered workflows if the input option was provided | |
| # | |
| # To access the terminal through the web-interface: | |
| # 1. Click on the web-browser link printed out in this action from the github | |
| # workflow terminal | |
| # 2. Press cntrl + c in the new tab that opens up to reveal the terminal | |
| # 3. To activate the conda environment run: | |
| # $ source $CONDA/etc/profile.d/conda.sh | |
| # $ conda activate test | |
| - name: Setup tmate session | |
| if: github.event_name == 'workflow_dispatch' && inputs.debug_enabled && inputs.job_name == matrix.NAME | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: true | |
| - name: Setup tmate session after failure | |
| if: github.event_name == 'workflow_dispatch' && inputs.debug_enabled && inputs.job_name == matrix.NAME && failure() | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: true | |
| - name: Display environment after | |
| run: | | |
| conda info | |
| conda list | |
| echo "=============================================================" | |
| echo "Check installed versions of Python, Numpy and Scipy" | |
| echo "=============================================================" | |
| python -c "import sys; assert str(sys.version).startswith(str(${{ matrix.PY }})), \ | |
| f'Python version {sys.version} is not the requested version (${{ matrix.PY }})'" | |
| python -c "import numpy; assert str(numpy.__version__).startswith(str(${{ matrix.NUMPY }})), \ | |
| f'Numpy version {numpy.__version__} is not the requested version (${{ matrix.NUMPY }})'" | |
| python -c "import scipy; assert str(scipy.__version__).startswith(str(${{ matrix.SCIPY }})), \ | |
| f'Scipy version {scipy.__version__} is not the requested version (${{ matrix.SCIPY }})'" | |
| - name: Run tests | |
| run: | | |
| python -m pip install testflo parameterized six | |
| conda install -y -q gettext | |
| echo "=============================================================" | |
| echo "Run tests from pyoptsparse repository" | |
| echo "=============================================================" | |
| unset DYLD_LIBRARY_PATH | |
| if [[ "$BRANCH" == "" ]]; then | |
| BRANCH=`python -c "from build_pyoptsparse import build_info; print(build_info['pyoptsparse']['branch'])"` | |
| BRANCH="-b $BRANCH" | |
| fi | |
| echo "git clone $BRANCH https://github.com/mdolab/pyoptsparse" | |
| git clone $BRANCH https://github.com/mdolab/pyoptsparse | |
| cd pyoptsparse/test*/ | |
| testflo --pre_announce --timeout=120 --show_skipped . | |
| - name: Audit dependencies | |
| id: audit | |
| continue-on-error: true | |
| run: | | |
| python -m pip install pip-audit | |
| echo "=============================================================" | |
| echo "Scan environment for packages with known vulnerabilities" | |
| echo "=============================================================" | |
| python -m pip_audit | |
| - name: Slack audit warnings | |
| if: steps.audit.outcome == 'failure' && matrix.NAME != 'Ubuntu Oldest' | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: 'warning' | |
| message: | | |
| pip-audit detected vulnerabilities. | |
| ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} | |
| - name: Notify slack | |
| uses: act10ns/[email protected] | |
| with: | |
| webhook-url: ${{ secrets.SLACK_WEBHOOK_URL }} | |
| status: ${{ job.status }} | |
| if: failure() |