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A detailed tutorial about how to convert geo-tiff files containing Digital Elevation Model (DEM) data into a pyramid of png tiles

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terrain-rgb

A detailed tutorial about how to convert geo-tiff files containing Digital Elevation Model (DEM) data into a pyramid of png files. The tiles go into an MBTiles container in order to host them offline with MBTileserver.

Motivation

Austria's gonvernment is fully commited to the idea of open data. A huge amount of data is published on Austria's open data site. This includes spatial data like (vector) basemaps, contour lines, hillshading tiles and a lot more. Also Digital Elevation Model (DEM) data is available. The data is published as a (huge!) GeoTIFF file. Although one may convert the file into a Cloud Optimized GeoTIFF (COG), the goal of this tutorial is how to convert the GeoTIFF into a pyramid of PNG files that are contained in an MBTiles container.

Based on the model of the Mapbox Terrain-RGB tileset we will document all steps required in order to create a similar set of tiles. This also means that we want our tiles to

  1. use the WebMercator projection EPSG:3857
  2. be available in the zoom levels from 8 up to 15

Tools

The open source world is full of useful tools that provide a bunch of functionality. Thanks to Docker there is no need to install them locally. Of course you can install all of the tool on your machine be we will use docker here. The tools folder of this repository contains a Dockerfile that can be used to create an image. Well will tag the image with rio since we make heavy use of Mapbox's RasterIO.

  cd tools
  docker build . -t rio

Based on the osgeo/gdal docker image we install rasterio and a few plugins from the RasterIO Plugin Registry.

Data

Since we mentioned Austria's Open Data initiative we will use the DEM of Austria with a resolution of 10x10m. All steps below assume that you have downloaded and extracted the GeoTIFF file. As of Feb. 2020, the name of the file containing the data is dhm_at_lamb_10m_2018.tif.

Inspecting the data

Let's see what we have got so far by starting the container and run rasterio in order to collect some information. We'll start the docker container and mount our folder /Users/thomas/Development/geodata/ogd-10m-at with the GeoTIFF inside to the folder /opt/dem within the container's filesystem. rio is the name of the image (see section #Tools) and we want Docker to execute the shell bash inside the container.

  docker run --rm -it -v /Users/thomas/Development/geodata/ogd-10m-at:/opt/dem rio bash

All commands are now executed inside the container. We change into folder /opt/dem and execute rasterio to get some basic information:

  rio info --indent 2 dhm_at_lamb_10m_2018.tif

The result gives us detailed insights to the GeoTIFF:

  {
  "blockxsize": 256,
  "blockysize": 256,
  "bounds": [
    108875.0,
    268625.0,
    689485.0,
    586555.0
  ],
  "colorinterp": [
    "gray"
  ],
  "compress": "deflate",
  "count": 1,
  "crs": "PROJCS[\"MGI_Austria_Lambert\",GEOGCS[\"MGI\",DATUM[\"Militar_Geographische_Institute\",SPHEROID[\"Bessel 1841\",6377397.155,299.1528128000033,AUTHORITY[\"EPSG\",\"7004\"]],AUTHORITY[\"EPSG\",\"6312\"]],PRIMEM[\"Greenwich\",0],UNIT[\"degree\",0.0174532925199433],AUTHORITY[\"EPSG\",\"4312\"]],PROJECTION[\"Lambert_Conformal_Conic_2SP\"],PARAMETER[\"standard_parallel_1\",46],PARAMETER[\"standard_parallel_2\",49],PARAMETER[\"latitude_of_origin\",47.5],PARAMETER[\"central_meridian\",13.33333333300013],PARAMETER[\"false_easting\",400000],PARAMETER[\"false_northing\",400000],UNIT[\"metre\",1,AUTHORITY[\"EPSG\",\"9001\"]]]",
  "descriptions": [
    null
  ],
  "driver": "GTiff",
  "dtype": "float32",
  "height": 31793,
  "indexes": [
    1
  ],
  "interleave": "band",
  "lnglat": [
    13.32163861566811,
    47.74771359892457
  ],
  "mask_flags": [
    [
      "nodata"
    ]
  ],
  "nodata": -3.4028234663852886e+38,
  "res": [
    10.0,
    10.0
  ],
  "shape": [
    31793,
    58061
  ],
  "tiled": true,
  "transform": [
    10.0,
    0.0,
    108875.0,
    0.0,
    -10.0,
    586555.0,
    0.0,
    0.0,
    1.0
  ],
  "units": [
    "metre"
  ],
  "width": 58061
}

There are some very important informations here:

  1. The projection is MGI_Austria_Lambert with a Bessel spheroid. This is typical for western european regions since the Lambert projection gives us the least distortions here.
  2. The GeoTiff is already tiled with a block size of 256 pixel.
  3. The elevation is encoded by makeing use of a Float32 data type.
  4. The value used to encode the semantic of no data available is -3.4028234663852886e+38

Reprojection and resetting the value for No Data

Since we want our tiles to use the WebMercator projection EPSG:3857 we have to re-project the GeoTIFF first. To do so we can employ the gdalwarp command. In order to avoid a second processing step we also reset the value for No Data. The original file has a value of -3.4028234663852886e+38 for this, we will set it to None. This is required because we want to map the elevation values from a 32 bit signed float number to 3 unsingned bytes. And -3.4028234663852886e+38 is out of scope for unsigned values.

  gdalwarp 
    -t_srs EPSG:3857 
    -dstnodata None 
    -novshiftgrid
    -co TILED=YES 
    -co COMPRESS=DEFLATE 
    -co BIGTIFF=IF_NEEDED
    -r lanczos
    dhm_at_lamb_10m_2018.tif 
    dhm_at_EPSG3857_10m_2018_LANCZOS.tif

This is going to take a few minutes and after it's done we can call rio info again:

{
  "blockxsize": 256,
  "blockysize": 256,
  "bounds": [
    1040113.8086787398,
    5821081.891449142,
    1925726.8625255583,
    6305034.650461274
  ],
  "colorinterp": [
    "gray"
  ],
  "compress": "deflate",
  "count": 1,
  "crs": "EPSG:3857",
  "descriptions": [
    null
  ],
  "driver": "GTiff",
  "dtype": "float32",
  "height": 32586,
  "indexes": [
    1
  ],
  "interleave": "band",
  "lnglat": [
    13.321300026030602,
    47.73607122149297
  ],
  "mask_flags": [
    [
      "all_valid"
    ]
  ],
  "nodata": null,
  "res": [
    14.851554625057746,
    14.851554625057746
  ],
  "shape": [
    32586,
    59631
  ],
  "tiled": true,
  "transform": [
    14.851554625057746,
    0.0,
    1040113.8086787398,
    0.0,
    -14.851554625057746,
    6305034.650461274,
    0.0,
    0.0,
    1.0
  ],
  "units": [
    "metre"
  ],
  "width": 59631
}

OK, the Coordinate Reference System (CRS) has changed to EPSG:3857. Due to the reprojection, the resolution increased from 10x10m to 14.85x14.85m.

By using QGIS we can visualize our greyscale data. The areas around Austria are _No Data _ areas.

DEM Visualization of Austria

RGB-ify

Now let's transform the greyscale data into the RGB data. The formula used to calculate the elevation is

  height = -10000 + ((R * 256 * 256 + G * 256 + B) * 0.1)

So the base value is -10000 and the interval (precision of the output) is 0.1.

  rio rgbify 
    -b -10000 
    -i 0.1
    dhm_at_EPSG3857_10m_2018_None.tif
    dhm_at_EPSG3857_10m_2018_RGB.tif

The image below shows the elevation data encoded in RGB values. The No Data area is now at elevation zero.

DEM Visualization of Austria

The blue-ish artefacts in the alps are pixels with an elevation above 3.000m.

Verifying the elevation data

In order to verify that all our steps did not change the elevation data too much, we're going to check some well-known heights. Vienna's Open Data Initiative publishes a set of proven elevation data.

  gdallocationinfo -wgs84 dhm_at_EPSG3857_10m_2018_RGB.tif 16.299522929921253 48.2383409011934

The table below shows an excerpt of randomly choosen points in Vienna:

Name Lon Lat proven lambert EPSG:3857 EPSG:3857 RGB
1180 Utopiaweg 1 16.299522929921253 48.2383409011934 333.406 333.0957 333.0957 333.0
1190 Höhenstraße 16.289583084029545 48.2610837936095 403.356 403.1385 403.662 403.6
1010 Stephansplatz 16.37255104738311 48.208694143314325 171.766 171.418 171.418 171.4
1070 Lindengasse 3 16.354641842524874 48.201276304040626 198.515 198.0624 198.2035 198.2
1220 Industriestraße 81 16.44120643847108 48.225003606677504 158.911 158.625 158.625 158.6

To our knowledge the other federal provinces of Austria do not provide any open site datum.

Tile pyramid

The last step of our journey is to cut the huge GeoTiff into a pyramid of tiles with a size of 256x256 pixel. Your favorite search engine will come up with a lot of ways to do so:

  • gdal_translate with gdaladdo
  • rasterio mbtiles
  • gdal2mbtiles
  • gdal2tiles

For us only the last one was successful. Create a new folder (e.g. tiles) where to put the tiles to.

Attention: None of processing steps mentioned here is done quickly, but the following is very time consuming. You should test the results first by reducing the zoom level(s) to either a single one (e.g. --zoom=8 or at least to leves with lower details.

On our 2019 Intel Core i9 with 8 cores the calculation of the tiles took more than two hours!

  gdal2tiles.py --zoom=5-15 --processes=8 dhm_at_EPSG3857_10m_2018_RGB.tif ./tiles

Optimization: The size of the resulting tile pyramid is 6.1 GByte. We are pretty sure that this process can be optimized by telling gdal2tiles to skip all tiles for the No Data areas. This will increase the processing speed and decrease the number of tiles required.

Besides the tiles gdal2tiles also creates a simple web application that you can use to view the result (we like the Leaflet version the most):

The two screenshots below show the rendered tiles as an overlay to Open Street Map at zoom level 8 (Austria) and level 14 (Salzburg/Grödig).

DEM Visualization with tiles at level 8 DEM Visualization with tiles at level 14

MBTiles container

Mapbox is one of the leading providers of maps and location services. They made most of their specifications and software Open Source. Besides the MBTile Specification they also provide mbutil which is a tools for putting tilesets into an MBTiles container.

mb-util imports an metadata.json file if it exists in the root of the tiles folder. Plese see the MBTile Metadata Specs for details:

  {
    "name": "Digitales Geländemodell (DGM) Österreich ",
    "format": "png",
    "minzoom": 5,
    "maxzoom": 15,
    "center": "47.73607122149297, 13.321300026030602, 8",
    "description": "Digitales Geländemodell (DGM) Österreich, CC-BY-4.0: Land Kärnten - data.ktn.gv.at",
    "version": "3"
  }

Whooa, now for the final step! Run this command and be a little patient ;-)

  mb-util --image_format=png --scheme=tms ./tiles/ ./dhm_at_EPSG3857_10m_2018.mbtiles

The optional --silent parameter would suppress the output of the tiles processed.

Creating the MBTile container takes a lot of time and the resulting mbtiles file has a similar size as the folder containing the PNG files (6 GB).

Hosting

We have been using tileserver-gl for our Hosting basemap.at vector tiles offline tutorial. For the elevation data tutorial we will be using mbtileserver which is written in golang. mbtileserver is a single executable that automatically provides all MBTiles containers that are located in a child-folder (tilesets) of the executable. Please consult the github site of mbtileserver for installation instructions.

~/go/bin/mbtileserver --verbose
  INFO[0000] Found 1 mbtiles files in ./tilesets

  --------------------------------------
  Use Ctrl-C to exit the server
  --------------------------------------
  HTTP server started on port 8000

Navigate your favorite browser to http://localhost:8000/services and you will receive a description of the (tile) services provided:

  [{"imageType":"png","url":"http://localhost:8000/services/dhm_at_EPSG3857_10m_2018"}]

Open the url and you will receive even more details, including the z/x/y url for the tiles:

  {
  "description": "Digitales Geländemodell (DGM) Österreich, CC-BY-4.0: Land Kärnten - data.ktn.gv.at",
  "format": "png",
  "id": "dhm_at_EPSG3857_10m_2018",
  "map": "http://localhost:8000/services/dhm_at_EPSG3857_10m_2018/map",
  "maxzoom": 15,
  "minzoom": 5,
  "name": "Digitales Geländemodell (DGM) Österreich ",
  "scheme": "xyz",
  "tilejson": "2.1.0",
  "tiles": [
    "http://localhost:8000/services/dhm_at_EPSG3857_10m_2018/tiles/{z}/{x}/{y}.png"
  ],
  "version": "3"
}

We have some UTF-8 encoding problems for german umlauts, but you can safely ignore these.

Now you have ready-to-use elevation tiles that are compatible with Mapbox' Terrain RGB tiles and are available offline!

ToDo

  1. Reduce the number of tiles by skipping the areas without elevation data. We estimate the potential savings are approximately 35%.
  2. Verify the elevation on randomly distributed locations over Austria.
  3. As of Feb. 17 2020 new data has been published Digitales Geländemodell - 10m. The GeoTIFF now contains a second band used for transparency. Maybe this renders 1) obsolete.

References

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