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Releases: sys-bio/antimony

v2.15

17 Jul 05:58
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One major change:

  • SBML import now removes function definitions (by replacing the places they were used with their expanded versions). To change this behavior use 'setRemoveFunctionDefinitions'.
  • New default descriptions for some annotation types.

v2.14

19 Dec 21:13
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  • Add support for algebraic rules
  • Add support for SBML 'notes'
  • Add support for 'creator', 'created', and 'modified' annotations.

v2.13.4

22 May 19:31
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Smallish updates:

  • Now default to output SBML L3v2
  • Basic unit types are now reserved words, so you can import SBML models with 'volume' parameters, etc.
  • Fix bug on SBML import of element with NULL ASTNode.

v2.13.3

23 Nov 23:03
0db49fd
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Design change:

  • '@' no longer parsed as 'at' in events. This allows the @ symbol to be used in different contexts in the future. (Also, nobody knew they could do things that way; it never made it into the documentation.)

Bug fixes:

  • Better parsing of '-o' in a math equation so it's not parsed as an 'interaction' (i.e. S1 -o J1; )
  • Importing unknown annotations are commented out, but visible, to allow round-tripping.

v2.13.2

01 Jul 23:17
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Maintenance release. Includes the following updates:

  • Now uses latest libsbml, which in turn now uses libexpat instead of libxml2.
  • Now possible to create universal binaries on Mac.

v2.13.1

25 Apr 21:58
97e6b59
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This release contains a few updates and a number of bugfixes:

  • Reactions may now have named stoichiometries, which can be assigned to normally, i.e.:
   n S1 -> S2; k*S1^n
   n = 2
  • Antimony is now mostly case-sensitive, so fewer models will clash with preexisting functions like 'sin' or 'sqr'.
  • The 'rateOf' function is now translated properly into SBML L3v2.
  • QTAntimony now uses QT5

In addition, the source has been moved to github, and we now have an automated build system on Azure, so that releases can be made in a timely manner with less work for the developers.

Release placeholder so I can upload libcheck files

16 Dec 00:14
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This release only exists so that azure can have a place from which to download libcheck and Qt for Windows.

Full release to come, after azure is working.