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Update check_data
Release #572: Commit 5b63b7e pushed by szhan
February 26, 2024 11:33 27s test_imputation
February 26, 2024 11:33 27s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #571: Commit 367f0bd pushed by szhan
February 26, 2024 11:30 29s test_imputation
February 26, 2024 11:30 29s
Update remap_alleles
Release #570: Commit b0be587 pushed by szhan
February 26, 2024 11:29 47s test_imputation
February 26, 2024 11:29 47s
Add TODO and notes
Release #569: Commit 4d8ca10 pushed by szhan
February 26, 2024 11:19 30s test_imputation
February 26, 2024 11:19 30s
Print site position as integer
Release #568: Commit 03ffab6 pushed by szhan
February 26, 2024 11:18 27s test_imputation
February 26, 2024 11:18 27s
Update comments
Release #567: Commit ce441d1 pushed by szhan
February 26, 2024 10:43 29s test_imputation
February 26, 2024 10:43 29s
Update docstring
Release #566: Commit cb7b26d pushed by szhan
February 26, 2024 10:40 26s test_imputation
February 26, 2024 10:40 26s
Rework compute_alt_allele_frequencies
Release #565: Commit 0bed81b pushed by szhan
February 26, 2024 10:37 32s test_imputation
February 26, 2024 10:37 32s
Add source and date
Release #564: Commit 53ab820 pushed by szhan
February 25, 2024 23:37 28s test_imputation
February 25, 2024 23:37 28s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #563: Commit e95c61c pushed by szhan
February 25, 2024 23:30 25s test_imputation
February 25, 2024 23:30 25s
Fix write_vcf
Release #562: Commit ceaf202 pushed by szhan
February 25, 2024 23:29 41s test_imputation
February 25, 2024 23:29 41s
Fix compute_alt_allele_frequencies
Release #561: Commit 3254017 pushed by szhan
February 25, 2024 23:09 25s test_imputation
February 25, 2024 23:09 25s
Add TODO
Release #560: Commit 5cc381b pushed by szhan
February 25, 2024 23:05 33s test_imputation
February 25, 2024 23:05 33s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #559: Commit df06f89 pushed by szhan
February 25, 2024 22:57 30s test_imputation
February 25, 2024 22:57 30s
Add TODO
Release #558: Commit a0e554d pushed by szhan
February 25, 2024 22:57 25s test_imputation
February 25, 2024 22:57 25s
Minor refactor
Release #557: Commit 622a54a pushed by szhan
February 25, 2024 22:37 27s test_imputation
February 25, 2024 22:37 27s
Add assertion
Release #556: Commit a678be2 pushed by szhan
February 25, 2024 22:36 28s test_imputation
February 25, 2024 22:36 28s
Update assertions
Release #555: Commit bf998ad pushed by szhan
February 25, 2024 22:24 35s test_imputation
February 25, 2024 22:24 35s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #554: Commit 007dd4e pushed by szhan
February 25, 2024 21:34 28s test_imputation
February 25, 2024 21:34 28s
Add AF
Release #553: Commit 5a3dd8b pushed by szhan
February 25, 2024 21:31 31s test_imputation
February 25, 2024 21:31 31s
Implement compute_alt_allele_frequencies
Release #552: Commit 94af729 pushed by szhan
February 25, 2024 21:25 27s test_imputation
February 25, 2024 21:25 27s
Add gt probs
Release #551: Commit f022b33 pushed by szhan
February 25, 2024 21:18 23s test_imputation
February 25, 2024 21:18 23s
Correct dosage
Release #550: Commit 73abd52 pushed by szhan
February 25, 2024 21:13 47s test_imputation
February 25, 2024 21:13 47s
Refactor
Release #549: Commit 6e46d71 pushed by szhan
February 25, 2024 21:01 30s test_imputation
February 25, 2024 21:01 30s
Refactor
Release #548: Commit 30850fd pushed by szhan
February 25, 2024 21:00 35s test_imputation
February 25, 2024 21:00 35s