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Update comments in get_transition_probs
Release #597: Commit e5f5e3d pushed by szhan
February 27, 2024 10:23 28s test_imputation
February 27, 2024 10:23 28s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #596: Commit 1371779 pushed by szhan
February 27, 2024 10:14 29s test_imputation
February 27, 2024 10:14 29s
Implement adaptive thresholding
Release #594: Commit eabeece pushed by szhan
February 27, 2024 09:55 32s test_imputation
February 27, 2024 09:55 32s
Implement thresholding
Release #593: Commit 7c4b22e pushed by szhan
February 27, 2024 09:41 59s test_imputation
February 27, 2024 09:41 59s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #592: Commit 066f988 pushed by szhan
February 26, 2024 21:11 35s test_imputation
February 26, 2024 21:11 35s
Fix bug
Release #591: Commit d1ff60f pushed by szhan
February 26, 2024 21:10 30s test_imputation
February 26, 2024 21:10 30s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #590: Commit 4eb85ed pushed by szhan
February 26, 2024 20:55 2m 33s test_imputation
February 26, 2024 20:55 2m 33s
Add Sm-1
Release #589: Commit b749fc7 pushed by szhan
February 26, 2024 20:55 34s test_imputation
February 26, 2024 20:55 34s
Release
Release #588: by szhan
February 26, 2024 18:52 57s test_imputation
February 26, 2024 18:52 57s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #587: Commit 6a1cd3a pushed by szhan
February 26, 2024 18:29 32s test_imputation
February 26, 2024 18:29 32s
Fix compute_allele_frequency
Release #586: Commit ddd8bf4 pushed by szhan
February 26, 2024 18:29 41s test_imputation
February 26, 2024 18:29 41s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #585: Commit 027e6db pushed by szhan
February 26, 2024 18:22 27s test_imputation
February 26, 2024 18:22 27s
Add dosage Rsquared
Release #584: Commit bad54f9 pushed by szhan
February 26, 2024 18:21 29s test_imputation
February 26, 2024 18:21 29s
Handle cases when denominator is too small
Release #583: Commit 40ac7c7 pushed by szhan
February 26, 2024 18:14 30s test_imputation
February 26, 2024 18:14 30s
Rework compute_allele_frequency
Release #582: Commit 1789f21 pushed by szhan
February 26, 2024 18:05 32s test_imputation
February 26, 2024 18:05 32s
Add asterisks to function args
Release #581: Commit 468e35b pushed by szhan
February 26, 2024 17:41 30s test_imputation
February 26, 2024 17:41 30s
Minor edits
Release #580: Commit 8f0d427 pushed by szhan
February 26, 2024 17:36 26s test_imputation
February 26, 2024 17:36 26s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #579: Commit 7d0c99f pushed by szhan
February 26, 2024 14:30 41s test_imputation
February 26, 2024 14:30 41s
Refactor ACGT_ALLELES
Release #578: Commit b010245 pushed by szhan
February 26, 2024 14:12 28s test_imputation
February 26, 2024 14:12 28s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE
Release #577: Commit 2178c3c pushed by szhan
February 26, 2024 12:04 31s test_imputation
February 26, 2024 12:04 31s
Recode allele to print in VCF
Release #576: Commit 176a5a4 pushed by szhan
February 26, 2024 12:03 29s test_imputation
February 26, 2024 12:03 29s
Get refs and alts
Release #575: Commit e90a234 pushed by szhan
February 26, 2024 11:52 29s test_imputation
February 26, 2024 11:52 29s
Add refs and alts to ImpData
Release #574: Commit 7968c5b pushed by szhan
February 26, 2024 11:49 28s test_imputation
February 26, 2024 11:49 28s
Add comments
Release #573: Commit 5105bbf pushed by szhan
February 26, 2024 11:36 25s test_imputation
February 26, 2024 11:36 25s