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Remove TODO
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szhan committed Mar 10, 2024
1 parent abe265a commit 565adfc
Showing 1 changed file with 0 additions and 4 deletions.
4 changes: 0 additions & 4 deletions python/tests/beagle_numba.py
Original file line number Diff line number Diff line change
Expand Up @@ -580,10 +580,6 @@ def interpolate_allele_probs(
probs[i, a] += state_mat[k - 1, j]
else:
# See 'setAlleleProbs' in 'LSHapBaum.java'.
# TODO: Figure out why BEAGLE does this. Not clear from BB2016.
# TODO: This deteriorates imputation accuracy. Remove.
# if sm[k - 1, j] >= _MIN_THRESHOLD:
# probs[i, a] += sm[k - 1, j]
if (
state_mat[k - 1, j] >= _MIN_THRESHOLD
or state_mat[k, j] >= _MIN_THRESHOLD
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