rename output files

t0mdavid-m · May 28, 2024 · a05c2ff · a05c2ff
1 parent 2f14ccc
commit a05c2ff
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/src/Workflow.py b/src/Workflow.py
@@ -442,15 +442,15 @@ def execution(self) -> None:
             out_spec2 = join(folder_path, f'spec2.tsv')
             out_spec3 = join(folder_path, f'spec3.tsv')
             out_spec4 = join(folder_path, f'spec4.tsv')
-            out_mzml = join(folder_path, f'out.mzML')
+            out_mzml = join(folder_path, f'out_deconv.mzML')
             out_deconv_mzml_viewer = join(folder_path_deconv, f'{file_name}_{current_time}_deconv.mzML')
             out_quant = join(folder_path, f'quant.tsv')
-            out_annotated_mzml = join(folder_path, f'annotated.mzML')
+            out_annotated_mzml = join(folder_path, f'anno_annotated.mzML')
             out_annotated_mzml_viewer = join(folder_path_anno, f'{file_name}_{current_time}_annotated.mzML')
-            out_msalign1 = join(folder_path, f'msalign1.msalign')
-            out_msalign2 = join(folder_path, f'msalign2.msalign')
-            out_feature1 = join(folder_path, f'feature1.feature')
-            out_feature2 = join(folder_path, f'feature2.feature')
+            out_msalign1 = join(folder_path, f'msalign1_ms1.msalign')
+            out_msalign2 = join(folder_path, f'msalign2_ms2.msalign')
+            out_feature1 = join(folder_path, f'feature1_ms1.feature')
+            out_feature2 = join(folder_path, f'feature2_ms2.feature')
             all_outputs = [
                 out_tsv, out_spec1, out_spec2, out_spec3, out_spec4, 
                 out_mzml, out_quant, out_annotated_mzml, out_msalign1,