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add support for slp series
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eberrigan committed May 8, 2024
1 parent 830a604 commit ff5909f
Showing 1 changed file with 33 additions and 10 deletions.
43 changes: 33 additions & 10 deletions sleap_roots/series.py
Original file line number Diff line number Diff line change
Expand Up @@ -97,25 +97,34 @@ def load(
# Attempt to load the predictions, with error handling
try:
if primary_name:
primary_path = (
Path(series_name).with_suffix(f".{primary_name}.slp").as_posix()
)
if Path(primary_name).as_posix().endswith(".slp"):
primary_path = primary_name
else:
primary_path = (
Path(series_name).with_suffix(f".{primary_name}.slp").as_posix()
)
if Path(primary_path).exists():
primary_labels = sio.load_slp(primary_path)
else:
print(f"Primary prediction file not found: {primary_path}")
if lateral_name:
lateral_path = (
Path(series_name).with_suffix(f".{lateral_name}.slp").as_posix()
)
if lateral_name.endswith(".slp"):
lateral_path = lateral_name
else:
lateral_path = (
Path(series_name).with_suffix(f".{lateral_name}.slp").as_posix()
)
if Path(lateral_path).exists():
lateral_labels = sio.load_slp(lateral_path)
else:
print(f"Lateral prediction file not found: {lateral_path}")
if crown_name:
crown_path = (
Path(series_name).with_suffix(f".{crown_name}.slp").as_posix()
)
if crown_name.endswith(".slp"):
crown_path = crown_name
else:
crown_path = (
Path(series_name).with_suffix(f".{crown_name}.slp").as_posix()
)
if Path(crown_path).exists():
crown_labels = sio.load_slp(crown_path)
else:
Expand Down Expand Up @@ -385,7 +394,21 @@ def find_all_h5_series(data_folders: Union[str, List[str]]) -> List[str]:


def find_all_slp_series(data_folders: Union[str, List[str]]) -> List[str]:
"""Find all .slp series from a list of folders."""
"""Find all .slp series from a list of folders.
Args:
data_folders: Path or list of paths to folders containing .slp series.
Returns:
A list of unique series names derived from the filenames.
"""
if type(data_folders) != list:
data_folders = [data_folders]

slp_series = []
for data_folder in data_folders:
slp_series.extend([Path(p).as_posix() for p in Path(data_folder).glob("*.slp")])
return list(set([Path(p).name.split(".")[0] for p in slp_series]))


def imgfig(
Expand Down

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