Fix documentation issues.

tanaylab · Mar 27, 2024 · 2bf1a01 · 2bf1a01
1 parent fe1a220
commit 2bf1a01
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Showing 33 changed files with 7 additions and 650 deletions.
diff --git a/deps/document.jl b/deps/document.jl
@@ -72,7 +72,6 @@ makedocs(;
         "messages.md",
         "generic.md",
         "example_data.md",
-        "todo.md",
     ],
 )
 

diff --git a/docs/v0.1.0/.documenter-siteinfo.json b/docs/v0.1.0/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-03-27T11:24:32","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-03-27T14:12:53","documenter_version":"1.3.0"}}
diff --git a/docs/v0.1.0/adapters.html b/docs/v0.1.0/adapters.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/anndata_format.html b/docs/v0.1.0/anndata_format.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/chains.html b/docs/v0.1.0/chains.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/computations.html b/docs/v0.1.0/computations.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/concat.html b/docs/v0.1.0/concat.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/contracts.html b/docs/v0.1.0/contracts.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/copies.html b/docs/v0.1.0/copies.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/data.html b/docs/v0.1.0/data.html
@@ -177,10 +177,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/example_data.html b/docs/v0.1.0/example_data.html
@@ -165,10 +165,6 @@
 </li>
 </ul>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">
@@ -297,8 +293,6 @@ <h2 id="Index">
 <nav class="docs-footer">
 <a class="docs-footer-prevpage" href="generic.html">« Generic
 </a>
-<a class="docs-footer-nextpage" href="todo.html">TODO »
-</a>
 <div class="flexbox-break">
 </div>
 <p class="footer-message">Powered by 

diff --git a/docs/v0.1.0/files_format.html b/docs/v0.1.0/files_format.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/formats.html b/docs/v0.1.0/formats.html
@@ -171,10 +171,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/generic.html b/docs/v0.1.0/generic.html
@@ -171,10 +171,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/h5df_format.html b/docs/v0.1.0/h5df_format.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/index.html b/docs/v0.1.0/index.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/matrix_layouts.html b/docs/v0.1.0/matrix_layouts.html
@@ -183,10 +183,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">
@@ -730,18 +726,6 @@ <h2 id="Ensuring-code-efficiency">
 <code>WarnHandler
 </code>.
 </p>
-<div class="admonition is-info">
-<header class="admonition-header">Note
-</header>
-<div class="admonition-body">
-<p>This will affect 
-<strong>all
-</strong> the processes 
-<code>@everywhere
-</code>, not just the current one.
-</p>
-</div>
-</div>
 </div>
 </section>
 </article>

diff --git a/docs/v0.1.0/memory_format.html b/docs/v0.1.0/memory_format.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/messages.html b/docs/v0.1.0/messages.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/objects.inv b/docs/v0.1.0/objects.inv
diff --git a/docs/v0.1.0/operations.html b/docs/v0.1.0/operations.html
@@ -177,10 +177,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/queries.html b/docs/v0.1.0/queries.html
@@ -189,10 +189,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/read_only.html b/docs/v0.1.0/read_only.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/reconstruction.html b/docs/v0.1.0/reconstruction.html
@@ -159,10 +159,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">

diff --git a/docs/v0.1.0/registry.html b/docs/v0.1.0/registry.html
@@ -177,10 +177,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">
@@ -324,7 +320,7 @@ <h2 id="Element-wise-operations">
 end
 @query_operation MyOperation
 
-MyOperation(context::QueryContext, parameter_values::Dict{String, QueryOperation})::MyOperation
+MyOperation(operation_name::Token, parameter_values::Dict{String, Token})::MyOperation
 </code>
 </pre>
 <p>The constructor should use 
@@ -426,7 +422,7 @@ <h2 id="Reduction-operations">
     ... optional parameters ...
 end
 
-MyOperation(context::QueryContext, parameter_values::Dict{String, QueryOperation})::MyOperation
+MyOperation(operation_name::Token, parameter_values::Dict{String, Token})::MyOperation
 </code>
 </pre>
 <p>The constructor should use 

diff --git a/docs/v0.1.0/search_index.js b/docs/v0.1.0/search_index.js
diff --git a/docs/v0.1.0/storage_types.html b/docs/v0.1.0/storage_types.html
@@ -165,10 +165,6 @@
 <a class="tocitem" href="example_data.html">Example data
 </a>
 </li>
-<li>
-<a class="tocitem" href="todo.html">TODO
-</a>
-</li>
 </ul>
 <div class="docs-version-selector field has-addons">
 <div class="control">