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tanaylab · Apr 12, 2024 · 3d00702 · 3d00702
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diff --git a/Manifest.toml b/Manifest.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.2"
+julia_version = "1.10.0"
 manifest_format = "2.0"
 project_hash = "d2b6258cc4c7c5fd14b9a90a37668c87421b80b3"
 
@@ -38,7 +38,7 @@ weakdeps = ["Dates", "LinearAlgebra"]
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.1.0+0"
+version = "1.0.5+1"
 
 [[deps.CompressHashDisplace]]
 deps = ["MurmurHash3"]
@@ -331,7 +331,7 @@ version = "1.2.0"
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
-version = "0.3.23+4"
+version = "0.3.23+2"
 
 [[deps.OpenMPI_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]

diff --git a/docs/v0.1.0/.documenter-siteinfo.json b/docs/v0.1.0/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-11T20:04:29","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.0","generation_timestamp":"2024-04-12T11:23:39","documenter_version":"1.3.0"}}
diff --git a/docs/v0.1.0/adapters.html b/docs/v0.1.0/adapters.html
@@ -493,7 +493,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/anndata_format.html b/docs/v0.1.0/anndata_format.html
@@ -642,7 +642,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
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-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
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diff --git a/docs/v0.1.0/chains.html b/docs/v0.1.0/chains.html
@@ -489,7 +489,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
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diff --git a/docs/v0.1.0/computations.html b/docs/v0.1.0/computations.html
@@ -611,7 +611,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
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-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/concat.html b/docs/v0.1.0/concat.html
@@ -552,7 +552,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
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-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/contracts.html b/docs/v0.1.0/contracts.html
@@ -562,7 +562,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/copies.html b/docs/v0.1.0/copies.html
@@ -771,7 +771,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
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-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/example_data.html b/docs/v0.1.0/example_data.html
@@ -347,7 +347,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/files_format.html b/docs/v0.1.0/files_format.html
@@ -732,7 +732,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/formats.html b/docs/v0.1.0/formats.html
@@ -2196,7 +2196,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
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diff --git a/docs/v0.1.0/generic_functions.html b/docs/v0.1.0/generic_functions.html
@@ -435,7 +435,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
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 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/generic_logging.html b/docs/v0.1.0/generic_logging.html
@@ -405,7 +405,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/generic_types.html b/docs/v0.1.0/generic_types.html
@@ -499,7 +499,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/groups.html b/docs/v0.1.0/groups.html
@@ -424,7 +424,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/h5df_format.html b/docs/v0.1.0/h5df_format.html
@@ -743,7 +743,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/index.html b/docs/v0.1.0/index.html
@@ -2134,7 +2134,7 @@ <h1 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/matrix_layouts.html b/docs/v0.1.0/matrix_layouts.html
@@ -871,7 +871,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/memory_format.html b/docs/v0.1.0/memory_format.html
@@ -345,7 +345,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/messages.html b/docs/v0.1.0/messages.html
@@ -427,7 +427,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/operations.html b/docs/v0.1.0/operations.html
@@ -1556,7 +1556,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/queries.html b/docs/v0.1.0/queries.html
@@ -4026,7 +4026,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/read_only.html b/docs/v0.1.0/read_only.html
@@ -419,7 +419,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/readers.html b/docs/v0.1.0/readers.html
@@ -1216,7 +1216,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/reconstruction.html b/docs/v0.1.0/reconstruction.html
@@ -435,7 +435,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/registry.html b/docs/v0.1.0/registry.html
@@ -714,7 +714,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/storage_types.html b/docs/v0.1.0/storage_types.html
@@ -691,7 +691,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/tokens.html b/docs/v0.1.0/tokens.html
@@ -896,7 +896,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/views.html b/docs/v0.1.0/views.html
@@ -970,7 +970,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/docs/v0.1.0/writers.html b/docs/v0.1.0/writers.html
@@ -1320,7 +1320,7 @@ <h2 id="Index">
 <hr/>
 <p>This document was generated with 
 <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl
-</a> version 1.3.0. Using Julia version 1.10.2.
+</a> version 1.3.0. Using Julia version 1.10.0.
 </p>
 </section>
 <footer class="modal-card-foot">

diff --git a/src/computations.jl b/src/computations.jl
@@ -29,7 +29,7 @@ function computation_wrapper(contract::Contract, name::AbstractString, inner_fun
     return (daf::DafReader, args...; kwargs...) -> (verify_input(contract, name, daf);
     result = inner_function(daf, args...; kwargs...);
     verify_output(contract, name, daf);
-    result)  # untested
+    result)
 end
 
 function computation_wrapper(first_contract::Contract, second_contract::Contract, name::AbstractString, inner_function)
@@ -39,7 +39,7 @@ function computation_wrapper(first_contract::Contract, second_contract::Contract
         result = inner_function(first_daf, second_daf, args...; kwargs...);
         verify_output(first_contract, name, first_daf);
         verify_output(second_contract, name, second_daf);
-        result)  # untested
+        result)
 end
 
 struct FunctionMetadata

diff --git a/src/generic_logging.jl b/src/generic_logging.jl
@@ -138,7 +138,7 @@ function logged_wrapper(
     else
         @debug "$(name) return }" _module = _module
     end;
-    result)  # only seems untested
+    result)
 end
 
 function metafmt(  # untested
@@ -159,7 +159,8 @@ function metafmt(  # untested
         push!(prefix_parts, Dates.format(now(), "yyyy-mm-dd HH:MM:SS.sss"))
     end
     if nprocs() > 1
-        push!(prefix_parts, "P$(myid())")  # untested
+        @assert false
+        push!(prefix_parts, "P$(myid())")
     end
     if nthreads() > 1
         push!(prefix_parts, "T$(threadid())")

diff --git a/src/queries.jl b/src/queries.jl
@@ -2573,7 +2573,7 @@ function patch_fetched_values(
             if !vector_fetch_state.may_modify_axis_mask
                 axis_mask = copy(axis_mask)
             end
-            axis_mask[axis_mask] = fetched_mask
+            axis_mask[axis_mask] = fetched_mask  # NOJET
         end
         vector_fetch_state.may_modify_axis_mask = true