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fix: crash in gene modules tab when force_cell_type didn't exist #337

fix: crash in gene modules tab when force_cell_type didn't exist

fix: crash in gene modules tab when force_cell_type didn't exist #337

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
release:
types: [published]
workflow_dispatch:
name: pkgdown
jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
r-version: 'release'
- name: Install system dependencies
run: |
sudo apt-get update
sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev
- name: Install BiocManager
run: |
install.packages("BiocManager")
BiocManager::install(version = "3.19")
shell: Rscript {0}
- name: Install dependencies
run: |
install.packages(c("remotes", "pkgdown"))
remotes::install_deps(dependencies = TRUE)
BiocManager::install(c("Rgraphviz", "graph"))
shell: Rscript {0}
- name: Install package
run: R CMD INSTALL .
- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}
- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs