Updates.

Manifest.toml

@@ -16,9 +16,9 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[deps.CSV]]
 deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"]
-git-tree-sha1 = "a44910ceb69b0d44fe262dd451ab11ead3ed0be8"
+git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab"
 uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
-version = "0.10.13"
+version = "0.10.14"
 
 [[deps.CategoricalArrays]]
 deps = ["DataAPI", "Future", "JSON", "Missings", "Printf", "Statistics", "StructTypes", "Unicode"]
@@ -85,7 +85,7 @@ version = "4.1.1"
 
 [[deps.Daf]]
 deps = ["CategoricalArrays", "ConcurrentUtils", "DataFrames", "Dates", "Distributed", "DocStringExtensions", "ExprTools", "HDF5", "JSON", "LinearAlgebra", "Logging", "Mmap", "Muon", "NamedArrays", "OrderedCollections", "Random", "Reexport", "SHA", "SparseArrays", "Statistics", "StatsBase", "StringViews", "URIs"]
-git-tree-sha1 = "06cec71f1491eec00804e07f7ba070d828af45be"
+git-tree-sha1 = "5b2d7e0564d27a67799f2db50a5a740c2da1cc2c"
 repo-rev = "main"
 repo-url = "https://github.com/tanaylab/Daf.jl"
 uuid = "1375bf9c-a47d-45a1-aad5-626dd8629d98"
@@ -181,9 +181,9 @@ version = "0.17.2"
 
 [[deps.HDF5_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "6384c847ff5056c5624e30e75b3ca48902cae0ac"
+git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.14.3+2"
+version = "1.14.3+3"
 
 [[deps.Hwloc_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]

deps/untested_lines.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 set -e -o pipefail
-if [ `echo */*.cov` = '*/*.cov' ]
+if [ "`echo */*.cov`" = '*/*.cov' ]
 then
     echo "No coverage!"
     exit 0

docs/v0.1.0/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-10T08:30:47","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-10T14:50:53","documenter_version":"1.3.0"}}

docs/v0.1.0/anndata_format.html

@@ -162,8 +162,8 @@ <h1 id="AnnData-Format">
 <section>
 <div>
 <pre>
-<code class="language-julia hljs">function import_h5ads!(;
-    destination::DafWriter,
+<code class="language-julia hljs">function import_h5ads!(
+    destination::DafWriter;
     raw_cells_h5ad::Maybe{AbstractString} = nothing,
     clean_cells_h5ad::AbstractString,
     metacells_h5ad::AbstractString,