WIP larger neighborhoods.

tanaylab · Jul 17, 2024 · 7af523a · 7af523a
1 parent 468efcf
commit 7af523a
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Showing 26 changed files with 467 additions and 5,254 deletions.
diff --git a/Project.toml b/Project.toml
@@ -7,17 +7,23 @@ version = "0.1.0"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 Clustering = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
 ConcurrentUtils = "3df5f688-6c4c-4767-8685-17f5ad261477"
+Convex = "f65535da-76fb-5f13-bab9-19810c17039a"
 Daf = "1375bf9c-a47d-45a1-aad5-626dd8629d98"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 GZip = "92fee26a-97fe-5a0c-ad85-20a5f3185b63"
 HTTP = "cd3eb016-35fb-5094-929b-558a96fad6f3"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
+SCS = "c946c3f1-0d1f-5ce8-9dea-7daa1f7e2d13"
 Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
+VectorizedStatistics = "3b853605-1c98-4422-8364-4bd93ee0529e"
 
 [compat]
 julia = "1.10"
diff --git a/deps/document.jl b/deps/document.jl
@@ -51,6 +51,7 @@ makedocs(;
         "gmara.md",
         "contracts.md",
         "identify_genes.md",
+        "programs.md",
         "boxes.md",
         "anndata_format.md",
         "defaults.md",

diff --git a/docs/v0.1.0/.documenter-siteinfo.json b/docs/v0.1.0/.documenter-siteinfo.json