DESCRIPTION

Package: mcATAC
Title: Metacell analysis for scATAC data
Version: 0.0.2.9000
Authors@R: c(
    person("Aviezer", "Lifshitz", , "aviezer.lifshitz@weizmann.ac.il", role = c("aut", "cre")),
    person("Yonatan", "Shapira", , "yonatan.shapira@weizmann.ac.il", role = "aut")
  )
Description: Metacell analysis for scATAC data
License: MIT + file LICENSE
Imports: 
    anndata,
    assertthat,
    cli,
    dplyr,
    dendextend,
    ggplot2,
    circlize,
    digest,
    scales,
    glue,
    igraph,
    Matrix,
    mclust,
    methods,
    misha (>= 4.2.0),
    misha.ext (>= 0.0.10),
    pheatmap,
    purrr,
    lifecycle,
    randomNames,
    rlang,
    ComplexHeatmap,
    sparseMatrixStats,
    stringi,
    stringr,
    tgstat,
    tgutil (>= 0.1.14),
    tibble,
    tidyr,
    withr,
    magrittr,
    ggtext,
    scattermore,
    grDevices,
    cowplot,
    RcppRoll,
    chameleon,
    tglkmeans (>= 0.5.0),
    parallel,
    plyr,
    yaml,
	zoo
Suggests: 
    testthat (>= 3.0.0),
    metacell,
    knitr,
    rmarkdown,
    fs,
    shiny, 
    shinyWidgets,
    shinyjs,
    shinycssloaders,
    cli,
    gert
Remotes:
    tanaylab/misha,
    tanaylab/misha.ext,
    tanaylab/tgutil,
    tanaylab/metacell,
    tanaylab/tglkmeans,
    bioc::3.15/ComplexHeatmap,
    bioc::3.14/sparseMatrixStats
Config/testthat/edition: 3
Encoding: UTF-8
Language: es
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
URL: https://github.com/tanaylab/mcATAC
BugReports: https://github.com/tanaylab/mcATAC/issues
VignetteBuilder: knitr
Depends: 
    R (>= 3.5),
    misha
LazyData: true
Collate: 
    'ATAC.R'
    'ATACPeaks.R'
    'ATACTracks-cache.R'
    'ATACTracks.R'
    'ScCounts.R'
    'McCounts.R'
    'PeakIntervals.R'
    'annotate.R'
    'cluster.R'
    'example_data.R'
    'export.R'
    'feature_selection.R'
    'import-counts.R'
    'import-peaks.R'
    'mcATAC-package.R'
    'metadata.R'
    'motifs.R'
    'pcr-bias.R'
    'peak_calling.R'
    'plot-markers.R'
    'plot-region.R'
    'plot.R'
    'project_on_mc.R'
    'promoters.R'
    'rna.R'
    'shiny.R'
    'utils-intervals.R'
    'utils-pipe.R'
    'utils.R'
    'zzz.R'