Get rid of redundant inncoming degrees check.

tanaylab · Aug 8, 2023 · 70a517f · 70a517f
1 parent 895ca2d
commit 70a517f
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Showing 3 changed files with 3 additions and 6 deletions.
diff --git a/Makefile b/Makefile
@@ -61,9 +61,9 @@ clean-docs:
 
 TODO = todo$()x
 
-pc: $(TODO) history format smells dist pytest docs staged tox  ## check everything before commit
+pc: $(TODO) ci staged  ## check everything before commit
 
-ci: history format smells dist docs tox  ## check everything in a CI server
+ci: history format smells dist pytest docs  ## check everything in a CI server
 
 history:  ## check to-be-done version is described in HISTORY.rst
 	@version=`grep 'current_version =' setup.cfg | sed 's/.* //;s/.dev.*//;'`; \

diff --git a/metacells/tools/knn_graph.py b/metacells/tools/knn_graph.py
@@ -246,10 +246,6 @@ def store_matrix(matrix: ut.CompressedMatrix, name: str, when: bool) -> None:  #
         pruned_ranks = _prune_ranks(balanced_ranks, k, incoming_degree_factor, outgoing_degree_factor)
         store_matrix(pruned_ranks, "pruned_ranks", True)
 
-        incoming_ranks = ut.nnz_per(pruned_ranks, per="column")
-        min_incoming_degree = np.min(incoming_ranks)
-        ut.log_calc("min_incoming_degree", min_incoming_degree)
-
         outgoing_ranks = ut.nnz_per(pruned_ranks, per="row")
         min_outgoing_degree = np.min(outgoing_ranks)
         ut.log_calc("min_outgoing_degree", min_outgoing_degree)

diff --git a/requirements.txt b/requirements.txt
@@ -1,3 +1,4 @@
+anndata
 cvxpy
 fastcluster
 importlib-metadata