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Biocatalogue perspective for Taverna workbench

This is a plugin for Apache Taverna Workbench that adds a perspective to use https://www.biocatalogue.org/ to browse and use SOAP and REST services from within Taverna.

This code was originally part of Apache Taverna Workbench, but was moved out as it had multiple issues:

  • Unclear license/attribution for several resources (see NOTICE file)
  • Code not fully updated for Taverna Workbench 3.x (e.g. missing OSGi service declarations, not using SCUFL2 model)

Thus the code was moved to the GitHub organization taverna-extras; it may be merged back into Apache Taverna Workbench if the above issues are resolved.

License

(c) 2007-2016 University of Manchester

(c) 2014-2016 Apache Software Foundation

This product includes software developed at The Apache Software Foundation.

Licensed under the Apache License 2.0, see the file LICENSE for details.

The file NOTICE contain any additional attributions and details about embedded third-party libraries and source code.

Contribute

Please subscribe to and contact the [dev@taverna](http://taverna.incubator.apache.org/community/lists#dev mailing list) for any questions, suggestions and discussions about Apache Taverna.

Bugs and feature requests for the biocatalogue perspective is tracked in the GitHub issue tracker Feel free to add an issue!

To suggest changes to this source code, feel free to raise a GitHub pull request.

Any contributions received are assumed to be covered by the Apache License 2.0.

Prerequisites

  • Java 1.7 or newer (tested with OpenJDK 1.8)
  • Apache Maven 3.2.5 or newer (older versions probably also work)

Building

To build, use

mvn clean install

This will build each module and run their tests.

Building on Windows

If you are building on Windows, ensure you unpack this source code to a folder with a short path name lenght, e.g. C:\src - as Windows has a limitation on the total path length which might otherwise prevent this code from building successfully.

Skipping tests

To skip the tests (these can be timeconsuming), use:

mvn clean install -DskipTests

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