⬆️ Bump jax from 0.4.29 to 0.4.30 (#615)

* ⬆️ Bump jax from 0.4.29 to 0.4.30

Bumps [jax](https://github.com/google/jax) from 0.4.29 to 0.4.30.
- [Release notes](https://github.com/google/jax/releases)
- [Changelog](https://github.com/google/jax/blob/main/CHANGELOG.md)
- [Commits](jax-ml/jax@jax-v0.4.29...jax-v0.4.30)

---
updated-dependencies:
- dependency-name: jax
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* fix some warnings

* bump python version

* downgrade numpy

* fix copy setup test

* why even bother

* oops

* roll back rtol -> tol to support older scipy

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dion Häfner <[email protected]>

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.black]
 line-length = 120
-target-version = ['py37', 'py38', 'py39', 'py310']
+target-version = ['py38', 'py39', 'py310', 'py311', 'py312']
 
 
 [tool.pytest.ini_options]

requirements.txt

@@ -1,7 +1,7 @@
 click==8.1.7
 entrypoints==0.4
 requests==2.32.3
-numpy==2.0.0
+numpy==1.26.4
 scipy==1.13.1
 h5netcdf==1.3.0
 h5py==3.11.0

requirements_jax.txt

@@ -1 +1 @@
-jax==0.4.29
+jax==0.4.30

test/cli_test.py

@@ -2,7 +2,6 @@
 import sys
 import filecmp
 import fnmatch
-import pkg_resources
 import subprocess
 from textwrap import dedent
 
@@ -28,12 +27,14 @@ def runner():
 
 @pytest.mark.parametrize("setup", SETUPS)
 def test_veros_copy_setup(setup, runner, tmpdir):
-    result = runner.invoke(veros.cli.veros_copy_setup.cli, [setup, "--to", os.path.join(tmpdir, setup)])
+    import veros
+
+    outpath = os.path.join(tmpdir, setup)
+    result = runner.invoke(veros.cli.veros_copy_setup.cli, [setup, "--to", outpath])
     assert result.exit_code == 0, setup
     assert not result.output
 
-    outpath = os.path.join(tmpdir, setup)
-    srcpath = pkg_resources.resource_filename("veros", f"setups/{setup}")
+    srcpath = os.path.join(os.path.dirname(veros.__file__), "setups", setup)
     ignore = [
         f
         for f in os.listdir(srcpath)

veros/cli/veros_resubmit.py

@@ -3,7 +3,6 @@
 import functools
 import subprocess
 import shlex
-import pipes
 import sys
 import os
 import time
@@ -36,7 +35,7 @@ def write_next_n(n, filename):
 
 
 def unparse(args):
-    return " ".join(map(pipes.quote, args))
+    return shlex.join(args)
 
 
 def call_veros(cmd, name, n, runlen):