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Update Jupyter Book and names #61

Merged
merged 6 commits into from
Jan 2, 2025
Merged

Update Jupyter Book and names #61

merged 6 commits into from
Jan 2, 2025

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WeilerP
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@WeilerP WeilerP commented Jan 2, 2025

Changes

  • Add cell cycle, dyngen, and toy GRN analyses to Jupyter Book
  • Fix file paths in Jupyter Book TOC
  • Rename notebooks

Bugs

  • The DATASET variable is set correctly for some dyngen notebooks.

Related issues

Closes #59. Closes #60. Closes #62.

Rename GRN and DPT notebooks to stage 2, and all
following notebooks accordingly.
Add link to Jupyter Book.
Update Jupyter Book index page to latest version
of README.
* Add cell cycle, toy GRN, and dyngen data.
* Fix paths
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@WeilerP WeilerP merged commit c809519 into main Jan 2, 2025
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@WeilerP WeilerP deleted the fix/jupyter_book branch January 2, 2025 20:33
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