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Notebook update to January 2021 version #58

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LuckyMD
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@LuckyMD LuckyMD commented Jan 5, 2021

This update addresses #20, #39, and must be tested in PR #54.

Main changes:

  • log2 FC -> log FC
  • Additional documentation on reading 10X files
  • removing duplicate var columns no longer generated in latest anndata concatenation function
  • cleaner QC covariate calculation

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@le-ander
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Thanks, will let you know how it goes. Haven't started building the R 4.0 container yet but it's on my list for January.

@lefterov
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lefterov commented Sep 8, 2021

No errors when running under Python3.9.7, and with cmake3.21.2; might want to update the .yml file.

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3 participants