don't turn sparse matrix into dense matrix for glmnet prediction #1959
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # NOTE: This workflow is overkill for most R packages and | |
| # check-standard.yaml is likely a better choice. | |
| # usethis::use_github_action("check-standard") will install it. | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| workflow_dispatch: | |
| name: R-CMD-check.yaml | |
| permissions: read-all | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| # use 4.0 or 4.1 to check with rtools40's older compiler | |
| - {os: windows-latest, r: 'oldrel-4'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| - {os: ubuntu-latest, r: 'oldrel-2'} | |
| - {os: ubuntu-latest, r: 'oldrel-3'} | |
| #- {os: ubuntu-latest, r: 'oldrel-4'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| CXX14: g++ | |
| CXX14STD: -std=c++1y | |
| CXX14FLAGS: -Wall -g -02 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install dev reticulate | |
| run: pak::pkg_install('rstudio/reticulate') | |
| shell: Rscript {0} | |
| - name: Install Miniconda | |
| # conda can fail at downgrading python, so we specify python version in advance | |
| env: | |
| RETICULATE_MINICONDA_PYTHON_VERSION: "3.8" | |
| run: reticulate::install_miniconda() # creates r-reticulate conda env by default | |
| shell: Rscript {0} | |
| - name: Install TensorFlow | |
| run: | | |
| tensorflow::install_tensorflow(version='2.13', conda_python_version = NULL) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash |