Rebuild docs.

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: paleomorph
 Type: Package
 Title: Geometric Morphometric Tools for Paleobiology
-Version: 0.1.2.999
+Version: 0.1.2
 Date: 2016-04-05
 Author: Tim Lucas, Anjali Goswami
 Maintainer: Tim Lucas <[email protected]>

R/procrustes.R

@@ -2,6 +2,7 @@
 #' Conducts Procrustes superimposition to align 3D shapes with or without scaling to centroid size.
 #'
 #'Conducts Procrustes superimposition to align 3D shapes with or without scaling to centroid size.
+#'Skips any missing values in computation of Procrustes coordinates.
 #' 
 #'@param A N x 3 x M matrix where N is the number of landmarks, 3 is the number of dimensions, and M is the number of specimens
 #'@param scale Logical indicating whether objects should be scaled to unit centroid size
@@ -18,6 +19,8 @@
 #'   \code{scaleDelta} set to \code{TRUE} or \code{FALSE}. 
 #'
 #'@return A new (N x 3 x M) array, where each 3d vector has been rotated and translated to minimize distances among specimens, and scaled to unit centroid size if requested.
+#'@importFrom utils write.table
+#'@importFrom stats complete.cases cov
 #'
 #'@examples
 #' # Make an array with 6 specimens and 20 landmarks

README.md

@@ -4,7 +4,8 @@ paleomorph
 [![Build Status](https://travis-ci.org/timcdlucas/paleomorph.svg)](https://travis-ci.org/timcdlucas/paleomorph)
 [![codecov.io](https://codecov.io/github/timcdlucas/paleomorph/coverage.svg?branch=master)](https://codecov.io/github/timcdlucas/paleomorph?branch=master)
 
-An R package for procrustes analysis for paleobiology.
+Geometric Morphometric Tools for Paleobiology.
+
 Fills missing symmetrical data with mirroring, calculates Procrustes alignments with or without scaling, and computes vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. 
 Tolerates missing data for all analyses. 
 Based on code written by Anjali Goswami.