Merge branch 'ship-init' into meson-win

.github/workflows/build.yml

@@ -589,6 +589,6 @@ jobs:
 
       - name: Upload coverage to codecov
         if: (success() || failure()) && steps.container.outcome == 'success'
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           directory: .coverage/coverage-report

.github/workflows/ci-meson.yml

@@ -58,7 +58,7 @@ jobs:
           key: ${{ runner.os }}-meson-${{ matrix.python }}
 
       - name: Setup Conda environment
-        uses: conda-incubator/setup-miniconda@v2
+        uses: conda-incubator/setup-miniconda@v3
         with:
           python-version: ${{ matrix.python }}
           miniforge-version: latest

CITATION.cff

@@ -4,8 +4,8 @@ title: SageMath
 abstract: SageMath is a free open-source mathematics software system.
 authors:
 - name: "The SageMath Developers"
-version: 10.6.beta0
+version: 10.6.beta1
 doi: 10.5281/zenodo.8042260
-date-released: 2024-12-08
+date-released: 2024-12-15
 repository-code: "https://github.com/sagemath/sage"
 url: "https://www.sagemath.org/"

VERSION.txt

@@ -1 +1 @@
-SageMath version 10.6.beta0, Release Date: 2024-12-08
+SageMath version 10.6.beta1, Release Date: 2024-12-15

build/pkgs/configure/checksums.ini

@@ -1,3 +1,3 @@
 tarball=configure-VERSION.tar.gz
-sha1=ca942ace2e5104f3ae9e57946c8228b0bdb580c5
-sha256=99c0a76943170a85d2eb868d72dd673c6b0df529d99b808458bdb3b285dec8fe
+sha1=ebc4bd50c332f06ad5b2a4ce6217ec65790655ab
+sha256=a2fa7623b406a7937ebfbe3cc6d9e17bcf0c219dec2646320b7266326d789b56

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-d129e08e85a0c6530fa140dfc04c86ac0b74e05e
+a72ae6d615ddfd3e49b36c200aaf14c24a265916

build/pkgs/execnet/distros/arch.txt

@@ -0,0 +1 @@
+python-execnet

build/pkgs/execnet/distros/debian.txt

@@ -0,0 +1 @@
+python3-execnet

build/pkgs/execnet/distros/fedora.txt

@@ -0,0 +1 @@
+python3-execnet

build/pkgs/execnet/distros/gentoo.txt

@@ -0,0 +1 @@
+dev-python/execnet

build/pkgs/execnet/distros/void.txt

@@ -0,0 +1 @@
+python3-execnet

build/pkgs/execnet/spkg-configure.m4

@@ -0,0 +1 @@
+SAGE_SPKG_CONFIGURE([execnet], [SAGE_PYTHON_PACKAGE_CHECK([execnet])])

build/pkgs/iniconfig/distros/arch.txt

@@ -0,0 +1 @@
+python-iniconfig

build/pkgs/iniconfig/distros/debian.txt

@@ -0,0 +1 @@
+python3-iniconfig

build/pkgs/iniconfig/distros/fedora.txt

@@ -0,0 +1 @@
+python3-iniconfig

build/pkgs/iniconfig/distros/gentoo.txt

@@ -0,0 +1 @@
+dev-python/iniconfig

build/pkgs/iniconfig/distros/void.txt

@@ -0,0 +1 @@
+python3-iniconfig

build/pkgs/iniconfig/spkg-configure.m4

@@ -0,0 +1 @@
+SAGE_SPKG_CONFIGURE([iniconfig], [SAGE_PYTHON_PACKAGE_CHECK([iniconfig])])

build/pkgs/planarity/spkg-configure.m4

@@ -1,6 +1,6 @@
 SAGE_SPKG_CONFIGURE([planarity], [
      AC_LANG_PUSH([C])
-     AC_CHECK_HEADER([planarity/planarity.h], [
+     AC_CHECK_HEADER([planarity/graph.h], [
         AC_CHECK_LIB([planarity], [gp_InitGraph], [
          AC_MSG_CHECKING([for planarity version 3.0 or later])
          AC_COMPILE_IFELSE(

build/pkgs/pyproject_api/distros/arch.txt

@@ -0,0 +1 @@
+python-pyproject-api

build/pkgs/pyproject_api/distros/debian.txt

@@ -0,0 +1 @@
+python3-pyproject-api

build/pkgs/pyproject_api/distros/fedora.txt

@@ -0,0 +1 @@
+python3-pyproject-api

build/pkgs/pyproject_api/distros/gentoo.txt

@@ -0,0 +1 @@
+dev-python/pyproject-api

build/pkgs/pyproject_api/distros/void.txt

@@ -0,0 +1 @@
+python3-pyproject-api

build/pkgs/pyproject_hooks/distros/arch.txt

@@ -0,0 +1 @@
+python-pyproject-hooks

build/pkgs/pyproject_hooks/distros/debian.txt

@@ -0,0 +1 @@
+python3-pyproject-hooks

build/pkgs/pyproject_hooks/distros/fedora.txt

@@ -0,0 +1 @@
+python3-pyproject-hooks

build/pkgs/pyproject_hooks/distros/gentoo.txt

@@ -0,0 +1 @@
+dev-python/pyproject-hooks

build/pkgs/pyproject_hooks/distros/void.txt

@@ -0,0 +1 @@
+python3-pyproject-hooks

build/pkgs/pyproject_hooks/spkg-configure.m4

@@ -0,0 +1 @@
+SAGE_SPKG_CONFIGURE([pyproject_hooks], [SAGE_PYTHON_PACKAGE_CHECK([pyproject_hooks])])

build/pkgs/pyproject_metadata/distros/arch.txt

@@ -0,0 +1 @@
+python-pyproject-metadata

build/pkgs/pyproject_metadata/distros/debian.txt

@@ -0,0 +1 @@
+python3-pyproject-metadata

build/pkgs/pyproject_metadata/distros/void.txt

@@ -0,0 +1 @@
+python3-pyproject-metadata

build/pkgs/sage_conf/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-conf ~= 10.6b0
+sage-conf ~= 10.6b1

build/pkgs/sage_docbuild/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-docbuild ~= 10.6b0
+sage-docbuild ~= 10.6b1

build/pkgs/sage_setup/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-setup ~= 10.6b0
+sage-setup ~= 10.6b1

build/pkgs/sage_sws2rst/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sage-sws2rst ~= 10.6b0
+sage-sws2rst ~= 10.6b1

build/pkgs/sagelib/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-standard ~= 10.6b0
+sagemath-standard ~= 10.6b1

build/pkgs/sagemath_bliss/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-bliss ~= 10.6b0
+sagemath-bliss ~= 10.6b1

build/pkgs/sagemath_categories/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-categories ~= 10.6b0
+sagemath-categories ~= 10.6b1

build/pkgs/sagemath_coxeter3/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-coxeter3 ~= 10.6b0
+sagemath-coxeter3 ~= 10.6b1

build/pkgs/sagemath_environment/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-environment ~= 10.6b0
+sagemath-environment ~= 10.6b1

build/pkgs/sagemath_mcqd/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-mcqd ~= 10.6b0
+sagemath-mcqd ~= 10.6b1

build/pkgs/sagemath_meataxe/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-meataxe ~= 10.6b0
+sagemath-meataxe ~= 10.6b1

build/pkgs/sagemath_objects/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-objects ~= 10.6b0
+sagemath-objects ~= 10.6b1

build/pkgs/sagemath_repl/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-repl ~= 10.6b0
+sagemath-repl ~= 10.6b1

build/pkgs/sagemath_sirocco/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-sirocco ~= 10.6b0
+sagemath-sirocco ~= 10.6b1

build/pkgs/sagemath_tdlib/version_requirements.txt

@@ -1,2 +1,2 @@
 # This file is updated on every release by the sage-update-version script
-sagemath-tdlib ~= 10.6b0
+sagemath-tdlib ~= 10.6b1

pkgs/sage-conf/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sage-conf_conda/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sage-conf_pypi/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sage-docbuild/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sage-setup/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sage-sws2rst/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-bliss/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-categories/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-coxeter3/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-environment/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-mcqd/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-meataxe/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-objects/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-repl/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-sirocco/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

pkgs/sagemath-tdlib/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

src/VERSION.txt

@@ -1 +1 @@
-10.6.beta0
+10.6.beta1

src/bin/sage-version.sh

@@ -4,6 +4,6 @@
 # which stops "setup.py develop" from rewriting it as a Python file.
 :
 # This file is auto-generated by the sage-update-version script, do not edit!
-SAGE_VERSION='10.6.beta0'
-SAGE_RELEASE_DATE='2024-12-08'
-SAGE_VERSION_BANNER='SageMath version 10.6.beta0, Release Date: 2024-12-08'
+SAGE_VERSION='10.6.beta1'
+SAGE_RELEASE_DATE='2024-12-15'
+SAGE_VERSION_BANNER='SageMath version 10.6.beta1, Release Date: 2024-12-15'

src/doc/en/developer/coding_in_cython.rst

@@ -32,13 +32,13 @@ up-to-date information or check out the
 to get started immediately.
 
 
-Writing cython code in Sage
+Writing Cython code in Sage
 ===========================
 
 There are several ways to create and build Cython code in Sage.
 
-#. In the Sage Notebook, begin any cell with ``%cython``. When you
-   evaluate that cell,
+#. In the Sage notebook or the Sage command line, begin any cell with
+   a line containing ``%%cython``. When you evaluate that cell,
 
    #. It is saved to a file.
 
@@ -53,22 +53,21 @@ There are several ways to create and build Cython code in Sage.
       program that was compiled to create the ``.so`` file.
 
    #. A ``cpdef`` or ``def`` function, say ``testfunction``, defined in
-      a ``%cython`` cell in a worksheet can be imported and made available
-      in a different ``%cython`` cell within the same worksheet by
+      a ``%%cython`` cell in a worksheet can be imported and made available
+      in a different ``%%cython`` cell within the same worksheet by
       importing it as shown below::
 
-          %cython
+          %%cython
           from __main__ import testfunction
 
-#. Create an ``.spyx`` file and attach or load it from the command
-   line. This is similar to creating a ``%cython`` cell in the
-   notebook but works completely from the command line (and not from
-   the notebook).
+   Refer to :meth:`sage.repl.ipython_extension.SageMagics.cython`.
+
+#. Create an ``.spyx`` file and attach or load it
+   from the command line.
 
 #. Create a ``.pyx`` file and add it to the Sage library.
    Then run ``sage -b`` to rebuild Sage.
 
-
 Attaching or loading .spyx files
 ================================
 

src/doc/en/reference/references/index.rst

@@ -277,6 +277,10 @@ REFERENCES:
 .. [Ap1997] \T. Apostol, Modular functions and Dirichlet series in
             number theory, Springer, 1997 (2nd ed), section 3.7--3.9.
 
+.. [AP2024] William Atherton, Dmitrii V. Pasechnik, *Decline and Fall of the
+            ICALP 2008 Modular Decomposition algorithm*, 2024.
+            :arxiv:`2404.14049`.
+
 .. [APR2001] George E. Andrews, Peter Paule, Axel Riese,
              *MacMahon's partition analysis: the Omega package*,
              European J. Combin. 22 (2001), no. 7, 887--904.
@@ -496,6 +500,9 @@ REFERENCES:
 .. [BeBo2009] Olivier Bernardi and Nicolas Bonichon, *Intervals in Catalan
               lattices and realizers of triangulations*, JCTA 116 (2009)
 
+.. [Best2021] Alex J. Best: Tools and Techniques for Rational Points on Curves.
+              PhD Thesis, Boston University, 2021.
+
 .. [BBGL2008] \A. Blondin Massé, S. Brlek, A. Garon, and S. Labbé,
               Combinatorial properties of f -palindromes in the
               Thue-Morse sequence. Pure Math. Appl.,
@@ -970,6 +977,10 @@ REFERENCES:
             Anal. Appl. 15 (1994) 804-823.
             :doi:`10.1137/S0895479892230031`
 
+.. [BL1995] W. Bosma, H.W. Lenstra: Complete Systems of Two Addition Laws for
+            Elliptic Curves. Journal of Number Theory, volume 53, issue 2,
+            pages 229-240. 1995.
+
 .. [BHMPW20a] Tom Braden, June Huh, Jacob P. Matherne, Nicholas Proudfoot,
              and Botong Wang, *A semi-small decomposition of the Chow
              ring of a matroid*, :arxiv:`2002.03341` (2020).

src/doc/en/reference/repl/index.rst

@@ -1,12 +1,14 @@
+.. _section-command-line:
+
 The Sage Command Line
 =====================
 
 The Sage Read-Eval-Print-Loop (REPL) is based on IPython. In this
 document, you'll find how the IPython integration works. You should
 also be familiar with the documentation for IPython.
 
-For more details about using the Sage command line, see the Sage
-tutorial.
+For more details about using the Sage command line, see `the Sage
+tutorial <../../tutorial/index.html>`_.
 
 Running Sage
 ------------

src/doc/en/thematic_tutorials/coercion_and_categories.rst

@@ -133,7 +133,6 @@ This base class provides a lot more methods than a general parent::
      'is_commutative',
      'is_field',
      'krull_dimension',
-     'localization',
      'ngens',
      'one',
      'order',

src/doc/en/tutorial/index.rst

@@ -2,8 +2,6 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-.. _tutorial:
-
 ========================
 Welcome to Sage Tutorial
 ========================

src/sage/algebras/finite_dimensional_algebras/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'all.py',
   'finite_dimensional_algebra.py',
   'finite_dimensional_algebra_element.pxd',

src/sage/algebras/fusion_rings/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'all.py',
   'f_matrix.py',
   'fast_parallel_fmats_methods.pxd',

src/sage/algebras/letterplace/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'all.py',
   'free_algebra_element_letterplace.pxd',
   'free_algebra_letterplace.pxd',

src/sage/algebras/lie_algebras/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'abelian.py',
   'affine_lie_algebra.py',
   'all.py',

src/sage/algebras/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'affine_nil_temperley_lieb.py',
   'algebra.py',
   'all.py',

src/sage/algebras/quatalg/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'all.py',
   'quaternion_algebra.py',
   'quaternion_algebra_element.pxd',

src/sage/arith/meson.build

@@ -1,4 +1,5 @@
 py.install_sources(
+  '__init__.py',
   'all.py',
   'all__sagemath_objects.py',
   'constants.pxd',