Hello World for Machine Learning in Medical Imaging

The idea is based on this article, the code and data come from this repo.

I want to start from this state of code and makes it "more MLOps", i.e.

• version control (Git and DVC),
• main code put outside notebook, to a proper Python package,
• testing (Pytest) and CI/CD (e.g. GitHub Actions),
• logging,
• configuration file for global variables (e.g. with dynaconf),
• Object-Oriented Programming with best practices, such as Design Patterns.

Installation and usage

Install required dependencies:

pip install -r requirements.txt

Run the tests:

pytest tests.py

Run the main script:

python main_script.py