Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
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Dec 20, 2024 - Nextflow
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cutandrun-seq
Here are 6 public repositories matching this topic...
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
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Apr 5, 2022 - Nextflow
Paired-end CUT and RUN data processing workflow designed for execution on the BigPurple HPC. Primary software used: FastQC, Fastp, Bowtie 2, SEACR, MultiQC
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Jan 17, 2023 - Python
An HMM-based domain caller from bw
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Jul 6, 2020 - R
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Jun 24, 2022 - Shell
Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq
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Aug 17, 2023 - R
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