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fragpipe

Here are 4 public repositories matching this topic...

MannLabs / alphapeptstats

Python Package for the downstream analysis of mass-spectrometry-based proteomics data

proteomics mass-spectrometry maxquant dia-nn fragpipe alphapept-ecosystem spectronaut msfragger

Updated Dec 12, 2024
Jupyter Notebook

tbaccata / amica

amica: an interactive and user-friendly web-based platform for the analysis of proteomics data

proteomics maxquant shiny-r proteomics-data-analysis fragpipe

Updated Dec 11, 2024
R

cmkobel / mspipeline1

🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.

hpc parallel-computing proteomics metaproteomics snakemake-pipeline fragpipe

Updated May 14, 2024
Python

workflow-development-interest-group / fragpipe-proteomics-pipeline-tutorial

CWL descriptions for FragPipe Proteomics Pipline

proteomics quantification proteome fragpipe fragpipe-proteomics-pipeline tmt-integrator

Updated Apr 5, 2022
Common Workflow Language

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