Repository for variant calling utilizing bioinformatics tools and databases
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Updated
Jul 9, 2024
Repository for variant calling utilizing bioinformatics tools and databases
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
An interactive visualization tool for GATK CNV analysis. Displays modeled segments and raw read/allele counts.
Evolutionary genomics of chromosomal inversions in Atlantic herring
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
The snakyVC pipeline is designed for efficiently and parallelly executing variant calling on next-generation sequencing (NGS) whole-genome datasets.
A Snakemake workflow for variant calling using GATK4 best practices
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Create required reference genome index files for WGS data analysis
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
A pipeline that calls variants on a group of BAM files. Category:Multi-Sample
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
Snakemake pipeline for variant calling using GATK
Variant Calling Pipeline Using GATK4 and Nextflow
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
GATK 4 Mutect2 Somático
Pipeline for calling and analyzing variants from RNA-Seq data
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