microbial
Here are 15 public repositories matching this topic...
Microbial community samples collected from the Trunk River in Woods Hole, MA 2014-2016.
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Jul 31, 2017 - HTML
Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
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Aug 15, 2017 - Standard ML
MATLAB scripts and functions for Microbial Network Analysis (MNA)
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Feb 16, 2020 - C++
Easy-to-use tool facilitating work with Mothur.
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Jul 20, 2020 - JavaScript
A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).
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Jul 4, 2021 - R
A computational tool for the prediction and identification of metabolites.
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Aug 19, 2021 - Java
Quantitative microbial risk assessment modeling
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Jul 8, 2023 - R
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
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Aug 14, 2024 - Python
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
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Jul 14, 2024 - HTML
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
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Aug 15, 2024 - Python
🔬 Simulate microbiology scenarios and experiments.
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Aug 13, 2024
Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
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Aug 16, 2024 - Nextflow
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