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Oct 13, 2021 - Python
ngs-analysis
Here are 192 public repositories matching this topic...
Diagnostic performance of HPV-DeepSeek, a hybrid capture whole genome sequencing liquid biopsy for HPV-associated cancers
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Nov 9, 2023
Python scripts for design of 5'/3' RACE-based NGS panels, and the following data analysis
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Sep 6, 2023 - Python
Análisis genómicos y transcriptómicos con plataforma NGS
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Feb 18, 2024 - HTML
Leveraging WES short reads for PAN-EXOME creation and analysis.
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Feb 1, 2024 - WDL
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
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Sep 24, 2023 - Python
A repository for maintaining assignments and projects, from courses done in bioinformatics and CB.
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Jan 2, 2022 - Jupyter Notebook
Genomics unit analysis pipelines toolkit: a collection of NGS workflows writtin in python3 and snakemake
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Sep 20, 2023 - Python
AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF input
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Sep 12, 2023 - Python
Program to generate RAxML sliding window trees
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Jan 1, 2023 - Python
workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.
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Mar 23, 2023 - HTML
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
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Nov 26, 2023 - HTML
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Mar 17, 2018 - Python
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Apr 18, 2023
GUI coupled to a local database that centralize all NGS variant data and annotations, and to provide powerful filtering tools that are easily accessible to the biologist.
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Jul 1, 2024 - Java
Mining CNV based on rice Nipponbare genome using resequencing data.
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Jan 6, 2023 - Perl
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
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Jul 3, 2024 - Python
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