Bio Big Data and Precision Medicine Training Course

A lightweight and simple ontology to reconcile and trace knowledge in pharmacogenomics

PGxCorpus, a manually annotated corpus, designed for the extraction of pharmacogenomic relations from text.

This is my honors project in Computer Science 2020. It is a simple Python Dash web interface that analyses CYP enzymes variability and their drug interactions using VCF files

A clinical decision-support system to identify pharmacogenomics profiles based on subjects genotype of five core genes. The paper has been published in the Journal of Personalized Medicine.

Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"

Velodrome combines semi-supervised learning and out-of-distribution generalization (domain generalization) for drug response prediction and pharmacogenomics

R scripts included in a bioinformatics pipeline for differential PGx analysis of cancer drug response

Introduction to R for Bioinformatics

My ITSE bachelor thesis at HPI/DHC

Text mining for pharmacogenomic associations for PharmGKB

Mixed-Effect Models for In Vitro Xenobiotic Metabolism

Web-hosted application to visualize the mRNA-miRNA interactome

A tool to genotype CYP2D6 with WGS data

Genome-Wide Association Study (GWAS) and Polygenic Risk Score (PRS) Shiny App!

PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction prediction

A Python package for pharmacogenomics (PGx) research

DWFA consensus algorithm for pb-StarPhase