Amplicon sequencing analysis workflow using DADA2 and QIIME2
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Updated
Aug 6, 2024 - Nextflow
Amplicon sequencing analysis workflow using DADA2 and QIIME2
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
A Python package for microbiome sequencing analysis with QIIME 2
Materials and presentation for the 2023 ISB Microbiome course.
Materials and presentation for the 2022 ISB Microbiome course.
This is a workflow for 16S rRNA analysis.
qiime2 decontam plugin
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Data analysis using QIIME2
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
This repository describes the methods used to test different sci-kit learn feature selection methods as part of Qiime2 q2-classifier.
Qiime2 Artifact eXtractor
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