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Brian Haas edited this page Jun 11, 2017
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Visit http://34.223.228.45/ws.html to access our AWS computational resources.
| Day | Time | Activities |
|---|---|---|
| Monday, June 12 | morning | Workshop Introduction |
| Exploring the Computational Infrastructure | ||
| afternoon | Unix command-line review | |
| Data overview and setup | ||
| Using FASTQC and Trimmomatic | ||
| Tuesday, June 13 | morning | Trinity de novo transcriptome assembly |
| Expression quantification | ||
| afternoon | Quality assessment for assembly | |
| QC samples and replicates | ||
| Wednesday, June 14 | morning | Statistical methods for differential expression analysis |
| afternoon | Transcript clustering and expression profiling | |
| Thursday, June 15 | morning | Methods for functional annotation |
| afternoon | Trinotate and TrinotateWeb | |
| afternoon | Functional enrichment analysis | |
| Friday, June 16 | morning | Review and custom data analyses |