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Tripal Analysis Expression v7.x-3.0 is here! The module now supports Tripal 3. Support for Tripal 2 has been dropped: If you'd like to continue using Tripal 2 content types, please use our previous release.
The module has been split into three to facilitate code maintenance: Protocol, Biomaterial, and Analysis Expression. All three modules are included in this repo and will be installed when enabling Tripal Analysis Expression.
New Features
- Unit assignments attached to quantification and corresponding administrative page
- Biosample property CV support. Previously, all Biosamples properties were loaded into Chado under the Biosampleprop CV. Now, all biosample properties may be assigned to a CVterm at the data loading step.
- All properties are now passed around the module instead of a predefined set of biomaterialprop properties (ie tissue)
- Group biosamples by analysis in all visualizations.
- Improved feature expression viewer allows customizing grouping and color of plot by biosample property.
Tripal Entity Types and Fields Defined
Entity Types
- Arraydesign
- Protocol
Fields
- Efo__substrate
- Local__cvterm
- Local__protocol_type
- Obi__manufacturer
- Obi__microarray_platform
- Sep__biological sample
- Attaches to organism as the biomaterial browser
- data__gene_expression
- Attaches to analysis (allows download) and features (individual feature expression plotter).