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travis: simplify samtools build
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tseemann committed Mar 13, 2020
1 parent 04ea898 commit 6626035
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions .travis/install_deps.sh
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,8 @@
set -e

HERE="$PWD"
WGET="wget --quiet"
#WGET="wget --quiet"
WGET="wget --progress=dot:mega"
MAKE="make --silent -j"
UNTAR="tar xf"

Expand All @@ -12,7 +13,7 @@ SAMTOOLS=samtools-$SAMTOOLSVER
echo "* $SAMTOOLS"
$WGET https://github.com/samtools/samtools/releases/download/$SAMTOOLSVER/$SAMTOOLS.tar.bz2
$UNTAR $SAMTOOLS.tar.bz2
(cd $SAMTOOLS && ./configure --prefix=$HERE/$SAMTOOLS && $MAKE install)
(cd $SAMTOOLS && ./configure --prefix=$HERE/$SAMTOOLS --disable-s3 --disable-gcs --disable-libcurl --disable-plugins && $MAKE install)
PATH=$HERE/$SAMTOOLS/bin:$PATH

SAMCLIP=samclip
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