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Added packaging workflows and setup and slightly better README
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turetske committed Apr 16, 2024
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91 changes: 91 additions & 0 deletions .github/workflows/testpypi-publish.yml
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name: Publish PelicanFS distribution to TestPyPI
on: pre-release

jobs:
build:
name: Build distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.x"
- name: Install pypa/build
run: >-
python 3 -m
pip install
build
--user
- name: Build a binary wheel and a source tarball
run: python3 -m build
- name: Store the distribution packages
uses: actions/upload-artiface@v3
with:
name: python-package-distributions
path: dist/

publish-to-test-pypi:
name: >-
Publish Python Distribution to TestPyPI
needs:
- build
runs-on: ubuntu-latest
environment:
name: testpypi
url: https://test.pypi.org/p/pelicanfs
permissions:
id-token: write
steps:
- name: Download all the dists
uses: actions/downaload-artifact@v3
with:
name: python-package-distributions
path: dist/
- name: Publish distribution to TestPyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
respository-url: https://test.pypi.org/legacy

github-release:
name: >-
Sign the Python distribution with Sigstore
and upload them to GitHub Release
needs:
- publish-to-test-pypi
runs-on: ubuntu-latest

permissions:
contents: write # IMPORTANT: mandatory for making GitHub Releases
id-token: write # IMPORTANT: mandatory for sigstore

steps:
- name: Download all the dists
uses: actions/download-artifact@v3
with:
name: python-package-distributions
path: dist/
- name: Sign the dists with Sigstore
uses: sigstore/[email protected]
with:
inputs: >-
./dist/*.tar.gz
./dist/*.whl
- name: Create GitHub Release
env:
GITHUB_TOKEN: ${{ github.token }}
run: >-
gh release create
'${{ github.ref_name }}'
--repo '${{ github.repository }}'
--notes ""
- name: Upload artifact signatures to GitHub Release
env:
GITHUB_TOKEN: ${{ github.token }}
# Upload to GitHub Release using the `gh` CLI.
# `dist/` contains the built packages, and the
# sigstore-produced signatures and certificates.
run: >-
gh release upload
'${{ github.ref_name }}' dist/**
--repo '${{ github.repository }}'
44 changes: 42 additions & 2 deletions README.md
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# pelicanfs
An ffspec implementation that uses the pelican client
# PelicanFS

## Overview

PelicanFS is a file system interface (fsspec) for the Pelican Platform. For more information about the Pelican Platform, please visit the [Pelican Platform](https://pelicanplatform.org) and the [Pelican Platform Github](https://github.com/PelicanPlatform/pelican) pages. For more information about fsspec, visit the [filesystem-spec](https://filesystem-spec.readthedocs.io/en/latest/index.html) page.


## Limitations

PelicanFS is built on top of the http fsspec implementation. As such, any functionality that isn’t available in the http implementation is also *not* available in PelicanFS.

### Installation

To install pelican, run:```pip install pelicanfs```### Using PelicanFS

To use pelicanfs, first create a `PelicanFileSystem` and provide it with the url for the director of your data federation. As an example using the OSDF director

```python
from pelicanfs.core import PelicanFileSystem

pelfs = PelicanFileSystem("https://osdf-director.osg-htc.org/")
```

From there, use `pelfs` as you would an http fsspec using a namespace path as the url path. For example:

```python
hello_world = pelfs.cat('/ospool/uc-shared/public/OSG-Staff/validation/test.txt')
print(hello_world)
```

### Getting an FSMap

Sometimes various systems that interact with an fsspec want a key-value mapper rather than a url. To do that, call the `PelicanMap` function with the namespace path and a `PelicanFileSystem` object rather than using the fsspec `get_mapper` call. For example

```python
from pelicanfs.core import PelicanFileSystem, PelicanMap

pelfs = PelicanFileSystem(“some-director-url”)
file1 = PelicanMap(“namespace/file/1”, pelfs=pelfs)
file2 = PelicanMap(“namespace/file/2”, pelfs=pelfs)
ds = xarray.open_mfdataset([file1,file2], engine='zarr')
```
8 changes: 8 additions & 0 deletions pyproject.toml
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[tool.pytest.ini_options]
addopts = [
"--import-mode=importlib",
]

[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"
11 changes: 11 additions & 0 deletions setup.cfg
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[metadata]
license_files = LICENSE

[options]
packages = find:
package_dir =
=src

[options.packages.find]
where = src
include = pelicanfs*
43 changes: 43 additions & 0 deletions setup.py
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from setuptools import setup, find_packages

packages = find_packages()
print(packages)

setup(
name="pelicanfs",
version="0.0.1",
description="An FSSpec Implementation using the Pelican System",
url = "https://github.com/PelicanPlatform/pelicanfs",
classifiers=[
"Development Status :: 2 - Pre-Alpha",
"Intended Audience :: Science/Research",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3 :: Only",
"License :: OSI Approved :: Apache Software License",
],
keywords="pelican, fsspec",
packages=find_packages(
where='src',
include=['pelicanfs*'],
),
package_dir={"": "src"},
python_requires=">=3.7, <4",
install_requires=["aiohttp==3.9.4",
"aiosignal==1.3.1",
"async-timeout==4.0.3",
"attrs==23.2.0",
"frozenlist==1.4.1",
"fsspec==2024.3.1",
"idna==3.7",
"multidict==6.0.5",
"yarl==1.9.4"],
project_urls={
"Source": "https://github.com/PelicanPlatform/pelicanfs",
"Pelican Source": "https://github.com/PelicanPlatform/pelican",
"Bug Reports":"https://github.com/PelicanPlatform/pelicanfs/issues"
},
)

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