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1. pdx_somatic_variant_calling pdx_somatic_variant_calling Public

   A containerized bioinformatics pipeline built with Nextflow to identify somatic (acquired) mutations in the tumor of patient-derived xenograft (PDX) models, a common analysis performed in preclinic…

   Nextflow 3

2. dietary_macros_psa_levels dietary_macros_psa_levels Public

   Clustering analysis of NHANES survey participants based on dietary macronutrient ratios and the association with prostate-specific antigen (PSA) levels using Propensity Score Weighting (PSW) and li…

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3. masters_thesis_project masters_thesis_project Public

   This meta-regression analyzed existing studies to examine the association between ADHD symptomatology and caffeinated beverage consumption using R

   Jupyter Notebook

4. neoantigen_prediction_workflow neoantigen_prediction_workflow Public

   A workflow consisting of several pipelines to perform neoantigen prediction for personalized cancer vaccine development

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