Merge pull request #6 from uclahs-cds/sfitzgibbon-1.16.1

update to 1.16.1

.github/workflows/Docker-build-release.yml

@@ -0,0 +1,20 @@
+---
+on:
+  push:
+    branches: ['main']
+    tags: ['v*']
+  release:
+    types: [published]
+
+jobs:
+  build-and-push-image:
+    runs-on: ubuntu-latest
+    name: A job to build and push a docker image
+    permissions:
+      contents: read
+      packages: write
+    steps:
+      - id: build-push
+        uses: uclahs-cds/tool-Docker-action/build-release@latest
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}

CHANGELOG.md

@@ -8,6 +8,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 ---
 ## [Unreleased]
 
+## [1.16.1] 2023-01-04
+### Updated
+- Update to SAMtools 1.16.1
+
 ## [1.15.1] 2022-05-27
 ### Updated
 - Update to SAMtools 1.15.1

Dockerfile

@@ -1,7 +1,7 @@
 FROM blcdsdockerregistry/bl-base:1.1.0 AS builder
 
 # Use mamba to install tools and dependencies into /usr/local
-ARG SAMTOOLS_VERSION=1.15.1
+ARG SAMTOOLS_VERSION=1.16.1
 RUN mamba create -qy -p /usr/local \
     -c bioconda \
     -c conda-forge \

README.md

@@ -9,7 +9,7 @@ SAMtools documentation [here](http://www.htslib.org/doc/samtools.html).
 # Version
 | Tool | Version |
 |------|---------|
-|SAMtools| 1.15.1|
+|SAMtools| 1.16.1|
 
 
 ---

metadata.yaml

@@ -1,10 +1,11 @@
 ---
-Category: 'docker'
-Description: 'Docker repository for SAMtools'
-Maintainers: ['[email protected]']
-Contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet']
-Languages: ['Dockerfile']
-Tools: ['SAMtools']
-Version: ['1.15.1']
-Purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format'
-References: 'Li H et al. Bioinformatics 25, (2009)'
+category: 'docker'
+description: 'Docker repository for SAMtools'
+maintainers: ['[email protected]']
+contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon']
+languages: ['Dockerfile']
+tools: ['SAMtools']
+version: ['1.16.1']
+purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format'
+references: 'Li H et al. Bioinformatics 25, (2009)'
+image_name: 'samtools'