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Fix edge colour matching #141

Merged
merged 4 commits into from
Oct 2, 2024
Merged

Fix edge colour matching #141

merged 4 commits into from
Oct 2, 2024

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whelena
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@whelena whelena commented Sep 13, 2024

Description

Edge customizations (width, type, colour) are scrambled when multiple colours are specified in the tree.df input

Closes

Checklist

  • This PR does NOT contain Protected Health Information (PHI). A repo may need to be deleted if such data is uploaded.
    Disclosing PHI is a major problem1 - Even a small leak can be costly2.

  • This PR does NOT contain germline genetic data3, RNA-Seq, DNA methylation, microbiome or other molecular data4.

  • This PR does NOT contain other non-plain text files, such as: compressed files, images (e.g. .png, .jpeg), .pdf, .RData, .xlsx, .doc, .ppt, or other output files.

  To automatically exclude such files using a .gitignore file, see here for example.

  • I have read the code review guidelines and the code review best practice on GitHub check-list.

  • I have set up or verified the main branch protection rule following the github standards before opening this pull request.

  • The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].

  • I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.

Footnotes

  1. UCLA Health reaches $7.5m settlement over 2015 breach of 4.5m patient records

  2. The average healthcare data breach costs $2.2 million, despite the majority of breaches releasing fewer than 500 records.

  3. Genetic information is considered PHI.
    Forensic assays can identify patients with as few as 21 SNPs

  4. RNA-Seq, DNA methylation, microbiome, or other molecular data can be used to predict genotypes (PHI) and reveal a patient's identity.

@whelena whelena marked this pull request as ready for review September 23, 2024 20:59
…Visualization into hwinata-fix-edge-colour-matching
@dan-knight dan-knight changed the title Hwinata fix edge colour matching Fix edge colour matching Sep 26, 2024
R/add.segs.R Outdated Show resolved Hide resolved
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approving to unblock for now

@whelena whelena merged commit 93769a9 into main Oct 2, 2024
6 checks passed
@whelena whelena deleted the hwinata-fix-edge-colour-matching branch October 2, 2024 22:32
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3 participants