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Release 0.10.1
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@lydiayliu lydiayliu released this 16 Nov 19:28
· 911 commits to main since this release
v0.10.1
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Fixed

  • Transcriptional coordinate to genomic coordinate not converted successfully when it is the last nucleotide of the transcript. #592

  • When creating the peptide cleavage graph, the end nodes of ate variant bubble with alt splice were collapsed with the reference node causing the graph cleavage process terminated too early resulting uncleaved nodes. #597

  • in callVariant when filtering variants associated with the donor transcript, the left breakpoint coordinate not converted successfully if it is the end of the transcript. #598

  • Large deletion caused by alt splice raised the complexity drastically so had to go back to treat alt splice deletion as subgraph again. #600

  • In circRNA, nodes that span over the backsplicing site with variant before the backsplicing site were not recognized correctly. #602

  • Failed to find the downstream exon start when the breakpoint is the first nucleotide before the exon start of a transcript on the negative strand. #603

  • In bruteForce, variants that start at the fusion breakpoint were not excluded. #604

  • Variant peptides on circRNA are missed by callVariant when there are multiple ORF candidates. #606

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