Release v5.1.0 (#151)

* bump version 5.1.0 * Update CHANGELOG.md * Autofix Nextflow configuration regression tests --------- Co-authored-by: Mootor <mmootor@ip-0A125967.rhxrlfvjyzbupc03cc22jkch3c.xx.internal.cloudapp.net> Co-authored-by: Faizal-Eeman <[email protected]>
uclahs-cds · Jun 10, 2024 · 994f46d · 994f46d
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,9 @@ All notable changes to the call-gSV pipeline.
 
 ## [Unreleased]
 
+---
+
+## [5.1.0] - 2024-06-10
 ### Changed
 - Use HG003 as test sample for NFTest
 - Update Nextflow configuration test workflows

diff --git a/nextflow.config b/nextflow.config
@@ -4,5 +4,5 @@ manifest {
     name = 'call-gSV'
     author = 'Yu Pan, Tim Sanders, Yael Berkovich, Mohammed Faizal Eeman Mootor'
     description = 'A pipeline to call germline structural variants utilizing Delly and Manta'
-    version = '5.0.0'
+    version = '5.1.0'
 }
diff --git a/test/configtest-F16.json b/test/configtest-F16.json
@@ -41,7 +41,7 @@
       "author": "Yu Pan, Tim Sanders, Yael Berkovich, Mohammed Faizal Eeman Mootor",
       "description": "A pipeline to call germline structural variants utilizing Delly and Manta",
       "name": "call-gSV",
-      "version": "5.0.0"
+      "version": "5.1.0"
     },
     "params": {
       "GCNV": "gCNV",
@@ -70,7 +70,7 @@
           ]
         }
       },
-      "log_output_dir": "/tmp/test-only-outputs/call-gSV-5.0.0/8675309/log-call-gSV-5.0.0-19970704T165655Z",
+      "log_output_dir": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z",
       "manta_version": "1.6.0",
       "map_qual": "20",
       "mappability_map": "/hot/ref/tool-specific-input/Delly/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.r101.s501.blacklist.gz",
@@ -79,7 +79,7 @@
       "min_cpus": "1",
       "min_memory": "1 MB",
       "output_dir": "/tmp/test-only-outputs",
-      "output_dir_base": "/tmp/test-only-outputs/call-gSV-5.0.0/8675309",
+      "output_dir_base": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309",
       "pipeval_version": "4.0.0-rc.2",
       "proc_resource_params": {
         "call_gCNV_Delly": {
@@ -368,15 +368,15 @@
     },
     "report": {
       "enabled": true,
-      "file": "/tmp/test-only-outputs/call-gSV-5.0.0/8675309/log-call-gSV-5.0.0-19970704T165655Z/nextflow-log/report.html"
+      "file": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z/nextflow-log/report.html"
     },
     "timeline": {
       "enabled": true,
-      "file": "/tmp/test-only-outputs/call-gSV-5.0.0/8675309/log-call-gSV-5.0.0-19970704T165655Z/nextflow-log/timeline.html"
+      "file": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z/nextflow-log/timeline.html"
     },
     "trace": {
       "enabled": true,
-      "file": "/tmp/test-only-outputs/call-gSV-5.0.0/8675309/log-call-gSV-5.0.0-19970704T165655Z/nextflow-log/trace.txt"
+      "file": "/tmp/test-only-outputs/call-gSV-5.1.0/8675309/log-call-gSV-5.1.0-19970704T165655Z/nextflow-log/trace.txt"
     },
     "tz": "sun.util.calendar.ZoneInfo[id=\"UTC\",offset=0,dstSavings=0,useDaylight=false,transitions=0,lastRule=null]",
     "workDir": "/scratch/300935"