Merge pull request #229 from uclahs-cds/sfitz-release-candidate-7.0.0…

…-rc1 Sfitz release candidate 7.0.0 rc1
uclahs-cds · Aug 31, 2023 · 1474787 · 1474787
2 parents 1ac35bd + bcfd6cd
commit 1474787
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,6 +6,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [7.0.0-rc.1] - 2023-08-28
+
 ### Added
 - Add compression of `SomaticSniper` `bam-readcount` output and move to `intermediate` directory
 - Add `ncbi_build` parameter
@@ -19,6 +21,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Add `split_VCF_bcftools` to `Mutect2` workflow, separating SNVs, MNVs and Indels
 
 ### Changed
+- Fix CPU allocation behavior with Docker
 - Remove redundant directories in Intersect log output directories
 - Change compression of intersect MAF file to bzip2
 - Update `README.md`

diff --git a/config/methods.config b/config/methods.config
@@ -182,5 +182,6 @@ methods {
         methods.set_output_directory()
         methods.set_pipeline_log()
         methods.check_valid_algorithms()
+        methods.setup_docker_cpus()
     }
 }
diff --git a/nextflow.config b/nextflow.config
@@ -9,6 +9,6 @@ manifest {
     nextflowVersion = '>=20.07.1'
     author = 'Yuan Zhe (Caden) Bugh, Mao Tian, Sorel Fitz-Gibbon'
     homePage = 'https://github.com/uclahs-cds/pipeline-call-sSNV'
-    version = '6.0.0'
+    version = '7.0.0-rc.1'
     name = 'call-sSNV'
 }