Merge pull request #291 from uclahs-cds/sfitz-release-8.1.0

Release 8.1.0
uclahs-cds · May 15, 2024 · c0f1e70 · c0f1e70
2 parents e038942 + e030671
commit c0f1e70
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Showing 4 changed files with 15 additions and 13 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,6 +6,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [8.1.0] - 2024-05-15
+
 ### Added
 - Add workflow to build and publish documentation to GitHub Pages
 - Add workflow to run Nextflow configuration regression tests

diff --git a/nextflow.config b/nextflow.config
@@ -9,6 +9,6 @@ manifest {
     nextflowVersion = '>=20.07.1'
     author = 'Yuan Zhe (Caden) Bugh, Mao Tian, Sorel Fitz-Gibbon'
     homePage = 'https://github.com/uclahs-cds/pipeline-call-sSNV'
-    version = '8.0.0'
+    version = '8.1.0'
     name = 'call-sSNV'
 }
diff --git a/test/configtest-F16.json b/test/configtest-F16.json
@@ -43,7 +43,7 @@
       "mainScript": "main.nf",
       "name": "call-sSNV",
       "nextflowVersion": ">=20.07.1",
-      "version": "8.0.0"
+      "version": "8.1.0"
     },
     "params": {
       "BCFtools_version": "1.17",
@@ -94,7 +94,7 @@
       },
       "intersect_regions": "/hot/ref/tool-specific-input/pipeline-call-sSNV-6.0.0/GRCh38-BI-20160721/Homo_sapiens_assembly38_no-decoy.bed.gz",
       "intersect_regions_index": "/hot/ref/tool-specific-input/pipeline-call-sSNV-6.0.0/GRCh38-BI-20160721/Homo_sapiens_assembly38_no-decoy.bed.gz.tbi",
-      "log_output_dir": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z",
+      "log_output_dir": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z",
       "manta_version": "1.6.0",
       "max_cpus": "16",
       "max_memory": "31 GB",
@@ -104,7 +104,7 @@
       "ncbi_build": "GRCh38",
       "normal_id": "0192847",
       "output_dir": "/tmp/outputs",
-      "output_dir_base": "/tmp/outputs/call-sSNV-8.0.0/0192847",
+      "output_dir_base": "/tmp/outputs/call-sSNV-8.1.0/0192847",
       "patient_id": "TWGSAMIN000001",
       "pipeval_version": "4.0.0-rc.2",
       "proc_resource_params": {
@@ -434,16 +434,16 @@
     },
     "report": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z/nextflow-log/report.html"
+      "file": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z/nextflow-log/report.html"
     },
     "sm_tag": "0192847",
     "timeline": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z/nextflow-log/timeline.html"
+      "file": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z/nextflow-log/timeline.html"
     },
     "trace": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z/nextflow-log/trace.txt"
+      "file": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z/nextflow-log/trace.txt"
     },
     "valid_algorithms": [
       "somaticsniper",

diff --git a/test/configtest-F32.json b/test/configtest-F32.json
@@ -43,7 +43,7 @@
       "mainScript": "main.nf",
       "name": "call-sSNV",
       "nextflowVersion": ">=20.07.1",
-      "version": "8.0.0"
+      "version": "8.1.0"
     },
     "params": {
       "BCFtools_version": "1.17",
@@ -94,7 +94,7 @@
       },
       "intersect_regions": "/hot/ref/tool-specific-input/pipeline-call-sSNV-6.0.0/GRCh38-BI-20160721/Homo_sapiens_assembly38_no-decoy.bed.gz",
       "intersect_regions_index": "/hot/ref/tool-specific-input/pipeline-call-sSNV-6.0.0/GRCh38-BI-20160721/Homo_sapiens_assembly38_no-decoy.bed.gz.tbi",
-      "log_output_dir": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z",
+      "log_output_dir": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z",
       "manta_version": "1.6.0",
       "max_cpus": "32",
       "max_memory": "64 GB",
@@ -104,7 +104,7 @@
       "ncbi_build": "GRCh38",
       "normal_id": "0192847",
       "output_dir": "/tmp/outputs",
-      "output_dir_base": "/tmp/outputs/call-sSNV-8.0.0/0192847",
+      "output_dir_base": "/tmp/outputs/call-sSNV-8.1.0/0192847",
       "patient_id": "TWGSAMIN000001",
       "pipeval_version": "4.0.0-rc.2",
       "proc_resource_params": {
@@ -434,16 +434,16 @@
     },
     "report": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z/nextflow-log/report.html"
+      "file": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z/nextflow-log/report.html"
     },
     "sm_tag": "0192847",
     "timeline": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z/nextflow-log/timeline.html"
+      "file": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z/nextflow-log/timeline.html"
     },
     "trace": {
       "enabled": true,
-      "file": "/tmp/outputs/call-sSNV-8.0.0/0192847/log-call-sSNV-8.0.0-19970704T165655Z/nextflow-log/trace.txt"
+      "file": "/tmp/outputs/call-sSNV-8.1.0/0192847/log-call-sSNV-8.1.0-19970704T165655Z/nextflow-log/trace.txt"
     },
     "valid_algorithms": [
       "somaticsniper",