call-sSNV v6.0.0

What's Changed

• Change intermediate directory and task.index by @maotian06 in #128
• Switch Docker Hub images to GitHub packages by @maotian06 in #127
• update to use SAMtools 1.16.1 by @sorelfitzgibbon in #135
• Add contamination file option by @maotian06 in #129
• Sfitzgibbon standardize readme by @sorelfitzgibbon in #136
• Sfitzgibbon add filtering stats output by @sorelfitzgibbon in #139
• update submodules and use set_resources_allocation from common by @sorelfitzgibbon in #140
• restore mistakenly removed F2.config by @sorelfitzgibbon in #142
• Sfitz add pipeline steps by @sorelfitzgibbon in #147
• correcting the changelog with fixed release by @sorelfitzgibbon in #151
• setup nftest a-mini by @sorelfitzgibbon in #153
• Increase muse retry memory by @sorelfitzgibbon in #156
• updated to use muse2.0.1 with sump parallelization by @sorelfitzgibbon in #157
• Sfitz roll back MuSE by @sorelfitzgibbon in #164
• Sfitz add muse flowchart by @sorelfitzgibbon in #161
• update to GATK v4.4.0.0 by @sorelfitzgibbon in #167
• Sfitz add mutect flowchart by @sorelfitzgibbon in #168
• Increase memory for GATK LearnReadOrientation by @sorelfitzgibbon in #165

New Contributors

• @sorelfitzgibbon made their first contribution in #135

Full Changelog: v5.0.0...v6.0.0